FAS1_ORYSJ
ID FAS1_ORYSJ Reviewed; 940 AA.
AC B2ZX90; A0A0P0VBQ0; Q0JGY5; Q8L4A0; Q8L4V5;
DT 31-OCT-2012, integrated into UniProtKB/Swiss-Prot.
DT 22-JUL-2008, sequence version 1.
DT 25-MAY-2022, entry version 55.
DE RecName: Full=Chromatin assembly factor 1 subunit FSM;
DE Short=CAF-1 subunit FSM;
DE AltName: Full=CAF-1 p150 homolog;
DE AltName: Full=Protein FASCIATA 1 homolog;
DE AltName: Full=Protein FLATTENED SHOOT MERISTEM;
GN Name=FSM; OrderedLocusNames=Os01g0896300, LOC_Os01g67100;
GN ORFNames=P0696G06.24, P0696G06.25;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, TISSUE SPECIFICITY, INDUCTION, AND
RP DISRUPTION PHENOTYPE.
RC STRAIN=cv. Nipponbare;
RX PubMed=18538315; DOI=10.1016/j.ydbio.2008.04.040;
RA Abe M., Kuroshita H., Umeda M., Itoh J., Nagato Y.;
RT "The rice flattened shoot meristem, encoding CAF-1 p150 subunit, is
RT required for meristem maintenance by regulating the cell-cycle period.";
RL Dev. Biol. 319:384-393(2008).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
CC -!- FUNCTION: Component of the chromatin assembly factor complex (CAF-1)
CC involved in chromatin assembly following DNA replication and DNA
CC repair. Required for several aspects of development, including apical
CC meristem maintenance by regulating the durations of the S- and G2-
CC phases of the cell cycle through its chromatin assembly activity.
CC {ECO:0000269|PubMed:18538315}.
CC -!- SUBUNIT: Component of the chromatin assembly factor 1 (CAF-1) complex,
CC composed of FSM (FAS1), FAS2 and MSI1. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- TISSUE SPECIFICITY: In embryo, expressed in leaf primordia, coleoptile
CC and radicle. In seedlings, expressed in cell division zone of roots,
CC SAM and leaf primordia. Expressed in floral organ primordia.
CC {ECO:0000269|PubMed:18538315}.
CC -!- INDUCTION: Cell cycle-regulated, showing a peak in the G1-phase.
CC {ECO:0000269|PubMed:18538315}.
CC -!- DISRUPTION PHENOTYPE: Dwarf and weak seedling that dies during
CC vegetative phase. {ECO:0000269|PubMed:18538315}.
CC -!- SIMILARITY: Belongs to the CHAF1A family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAC06267.1; Type=Erroneous gene model prediction; Note=Was originally thought to correspond to two different genes.; Evidence={ECO:0000305};
CC Sequence=BAC06268.1; Type=Erroneous gene model prediction; Note=Was originally thought to correspond to two different genes.; Evidence={ECO:0000305};
CC Sequence=BAF06993.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AB360550; BAG48199.1; -; mRNA.
DR EMBL; AP003316; BAC06267.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP003316; BAC06268.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008207; BAF06993.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014957; BAS75701.1; -; Genomic_DNA.
DR RefSeq; XP_015621605.1; XM_015766119.1.
DR RefSeq; XP_015621606.1; XM_015766120.1.
DR RefSeq; XP_015621607.1; XM_015766121.1.
DR AlphaFoldDB; B2ZX90; -.
DR SMR; B2ZX90; -.
DR STRING; 4530.OS01T0896300-00; -.
DR PaxDb; B2ZX90; -.
DR PRIDE; B2ZX90; -.
DR EnsemblPlants; Os01t0896300-00; Os01t0896300-00; Os01g0896300.
DR GeneID; 4324973; -.
DR Gramene; Os01t0896300-00; Os01t0896300-00; Os01g0896300.
DR KEGG; osa:4324973; -.
DR eggNOG; KOG4364; Eukaryota.
DR HOGENOM; CLU_011512_0_0_1; -.
DR InParanoid; B2ZX90; -.
DR OMA; SETALWC; -.
DR OrthoDB; 438497at2759; -.
DR PlantReactome; R-OSA-9030680; Crown root development.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR Genevisible; B2ZX90; OS.
DR GO; GO:0033186; C:CAF-1 complex; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
DR GO; GO:0044772; P:mitotic cell cycle phase transition; TAS:UniProtKB.
DR GO; GO:0006334; P:nucleosome assembly; IBA:GO_Central.
DR GO; GO:0010389; P:regulation of G2/M transition of mitotic cell cycle; TAS:UniProtKB.
DR GO; GO:0010449; P:root meristem growth; IMP:UniProtKB.
DR GO; GO:0010448; P:vegetative meristem growth; IMP:UniProtKB.
DR InterPro; IPR022043; CAF1A.
DR Pfam; PF12253; CAF1A; 1.
PE 2: Evidence at transcript level;
KW Chromatin regulator; Coiled coil; DNA damage; DNA recombination;
KW DNA repair; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..940
FT /note="Chromatin assembly factor 1 subunit FSM"
FT /id="PRO_0000420144"
FT REGION 317..473
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 638..682
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 919..940
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 329..439
FT /evidence="ECO:0000255"
FT COMPBIAS 317..334
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 335..431
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 444..461
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 638..679
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 940 AA; 105465 MW; FEB9F93822C3819E CRC64;
MEGGKLLGVA HPEPANNIDA DLRYDLGQSR MQVDGPVVLN RSAELEPSDS MAIDDVPVEA
SSQPAPAKQS PALMDTIVEV QKQLKRKRAS SGPALAAADK DALVAGCCQE LEGLLEYYRE
VSGHRMQFEV GNLSTNAAIG CLLEESSLGL SKLVDEIYEK LKGMEGVSAT SVRSSVLLIG
QRMMYGQSSP DADVLEDESE TALWCWEVRD LKVIPLRMRG PLSTRRTARK KIHERITAIY
STLSVLEAPG AEAQVNDMRK ASLKLSKALN LEGIKSLVER ATQKSNIERG AKNTGSTAKE
PMQEMVKSNN DTGIIENVDD SQLQKNTSTN EKDTQKAQKQ VEKELKQKEK EEARMRKQQK
KQQEEALREQ KRREKEEAEM KKQQRKQEEE AQKEQKRREK EEAETRKQQK KQQEEAEKEQ
KRREKEAVQL KKQLAIQKQA SMMERFFKNK KDSEKLEKPG GKDSGVQTTD PCTTNKEVVP
LVTSIIDSSF SQKENWALED LRRLQISGWQ KLSSYNRSSR WGIRNKPKKE AFKELKLQKT
SDNMLEEILS PNEDTCHNLS QENEPDKSAN DVDMLPAVEL QFHGTNHANP LPTRSIKRKL
LQFDKSNRPA YYGTWRKKSA VVGPRCPLKM DPDLDYEVDS DDEWEEEDPG ESLSDCEKDN
DEVMEEDSKI TDEESEDSFF VPDGYLSDNE GIQIESLLDD KDEASSSPPD QCAEVEEFRA
LLRQQKVLNT LTEQALRKSQ PLVISNLTHE KAELLTAGDL KGTSKIEQLC LQVLSMRICP
GGATIDLPVI DSSSANAEET NQLNVKSSPA AASAIPDTDL AEIVKVIGSC RDGINKLVES
LHQKFPNVSK SQLKNKVREI SEFVDNRWQV KKEVLSKLGL SSSPASSKKP KSIATYFSKR
CLPPEEAILA SPELRLKSKT TQNVNGDTDI PRINLLPSSQ
