FB213_ARATH
ID FB213_ARATH Reviewed; 488 AA.
AC Q9LZY4; F4JCZ5; Q0WMD9;
DT 03-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT 22-FEB-2012, sequence version 3.
DT 03-AUG-2022, entry version 110.
DE RecName: Full=F-box protein At3g60790;
GN OrderedLocusNames=At3g60790; ORFNames=T4C21.200;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP PARTIAL NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q9LZY4-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q9LZY4-2; Sequence=VSP_042260, VSP_042261;
CC -!- MISCELLANEOUS: [Isoform 2]: Incomplete sequence. May be due to an
CC intron retention. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF01717.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
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DR EMBL; AL162295; CAB82683.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE80108.1; -; Genomic_DNA.
DR EMBL; AK229888; BAF01717.1; ALT_INIT; mRNA.
DR PIR; T47890; T47890.
DR RefSeq; NP_191638.1; NM_115943.1. [Q9LZY4-1]
DR AlphaFoldDB; Q9LZY4; -.
DR PaxDb; Q9LZY4; -.
DR PRIDE; Q9LZY4; -.
DR EnsemblPlants; AT3G60790.1; AT3G60790.1; AT3G60790. [Q9LZY4-1]
DR GeneID; 825250; -.
DR Gramene; AT3G60790.1; AT3G60790.1; AT3G60790. [Q9LZY4-1]
DR KEGG; ath:AT3G60790; -.
DR Araport; AT3G60790; -.
DR TAIR; locus:2101791; AT3G60790.
DR HOGENOM; CLU_030531_0_0_1; -.
DR InParanoid; Q9LZY4; -.
DR OMA; IELEIFF; -.
DR OrthoDB; 645475at2759; -.
DR PRO; PR:Q9LZY4; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LZY4; baseline and differential.
DR Genevisible; Q9LZY4; AT.
DR Gene3D; 3.80.10.10; -; 1.
DR InterPro; IPR036047; F-box-like_dom_sf.
DR InterPro; IPR001810; F-box_dom.
DR InterPro; IPR044997; F-box_plant.
DR InterPro; IPR032675; LRR_dom_sf.
DR PANTHER; PTHR32153; PTHR32153; 1.
DR Pfam; PF00646; F-box; 1.
DR SUPFAM; SSF81383; SSF81383; 1.
DR PROSITE; PS50181; FBOX; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Reference proteome.
FT CHAIN 1..488
FT /note="F-box protein At3g60790"
FT /id="PRO_0000283482"
FT DOMAIN 49..95
FT /note="F-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00080"
FT REGION 1..21
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 328..363
FT /note="EKIRIWLELMVSQIYHMKRTGSLSVSVDVRNPNEVE -> VQVQATCMPLDI
FT ILNIIFCFDMVCCIMNSGENKNLA (in isoform 2)"
FT /evidence="ECO:0000305"
FT /id="VSP_042260"
FT VAR_SEQ 364..488
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000305"
FT /id="VSP_042261"
SQ SEQUENCE 488 AA; 55927 MW; 7B057EF2A6BA6ED0 CRC64;
MTTQSSSSSS SLPSSLSSTP PLLASNARCK VLRTGASSKG KGKGIKYPVD RISMLPDEML
QKILSTLSTK DAVITSTLSK RWVDQWKRIP HLCVDMRNIM RTNPTSYVHE LSFRFAESMT
KTLNNHRGHL ESCTISHIQF IFLFIDRWIQ TVTREKQTKE ITLVNNIGCM TPFVRYNSLH
LSPSAFCHPS LTSLSLTRYK LLEKAFKNCC NLKILKLYDI MSDVSVLSNV IKACSSLEVL
VLQITFLNQA SALKIENKKL EFLQVTWPCL MNRMEVNTPR LVIFDIKSIY CFGYSVEAPK
LSMFKRDYWV GGMSYPHLSY HISSLAQEKI RIWLELMVSQ IYHMKRTGSL SVSVDVRNPN
EVEILKEVLL LWDGEMMDLE ILFKNNNAPI EEGESFITGG ARNKWWDGEK PFPDDFFRVC
TVWMYNFDGS NEEEFALASR FVTQGTVTEK LMIKTSTYPP VKQLMTEAKV AKLMELPKGY
EYLDIECF
