FB251_ARATH
ID FB251_ARATH Reviewed; 418 AA.
AC Q94A64; Q2V3A3; Q9LZB3;
DT 03-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT 01-DEC-2001, sequence version 1.
DT 03-AUG-2022, entry version 101.
DE RecName: Full=F-box protein At5g03970;
GN OrderedLocusNames=At5g03970; ORFNames=F8F6.180;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q94A64-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q94A64-2; Sequence=VSP_024321;
CC -!- SEQUENCE CAUTION:
CC Sequence=CAB85517.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AL162873; CAB85517.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002688; AED90677.1; -; Genomic_DNA.
DR EMBL; AY050339; AAK91356.1; -; mRNA.
DR EMBL; BT000481; AAN18050.1; -; mRNA.
DR PIR; T48424; T48424.
DR RefSeq; NP_568131.1; NM_120479.2. [Q94A64-1]
DR AlphaFoldDB; Q94A64; -.
DR BioGRID; 15556; 11.
DR IntAct; Q94A64; 4.
DR STRING; 3702.AT5G03970.1; -.
DR PaxDb; Q94A64; -.
DR PRIDE; Q94A64; -.
DR ProteomicsDB; 222401; -. [Q94A64-1]
DR EnsemblPlants; AT5G03970.1; AT5G03970.1; AT5G03970. [Q94A64-1]
DR GeneID; 830276; -.
DR Gramene; AT5G03970.1; AT5G03970.1; AT5G03970. [Q94A64-1]
DR KEGG; ath:AT5G03970; -.
DR Araport; AT5G03970; -.
DR TAIR; locus:2150665; AT5G03970.
DR eggNOG; ENOG502R8CU; Eukaryota.
DR InParanoid; Q94A64; -.
DR OrthoDB; 479930at2759; -.
DR PhylomeDB; Q94A64; -.
DR PRO; PR:Q94A64; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q94A64; baseline and differential.
DR Genevisible; Q94A64; AT.
DR InterPro; IPR017451; F-box-assoc_interact_dom.
DR InterPro; IPR036047; F-box-like_dom_sf.
DR SUPFAM; SSF81383; SSF81383; 1.
DR TIGRFAMs; TIGR01640; F_box_assoc_1; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Reference proteome.
FT CHAIN 1..418
FT /note="F-box protein At5g03970"
FT /id="PRO_0000283518"
FT DOMAIN 18..66
FT /note="F-box"
FT VAR_SEQ 1..5
FT /note="MSCSA -> MVVQRSSSP (in isoform 2)"
FT /evidence="ECO:0000305"
FT /id="VSP_024321"
SQ SEQUENCE 418 AA; 47949 MW; 50A8E362037C129E CRC64;
MSCSARLKTN LGMTSALSTH EVLNSNDTMC EILILLPPET IYKLILVSKR WLEIIASPCF
RHTYLAKWKP NFELIGFFVC SSMYLGRRID GTRRPRAEPS LPLLSTSSIG DEIESSGILK
KLGYYIDSAD GLLLCGRHPK AYYLWDPSTQ KQQQLPRPRV HFEELCMSLI SEDSPDQGFS
YKVVRAECVA FPVNSTKVKV ETFSSKTSTW SYSELICLEP LSLSPWTPGR VIKGVVYWHA
RGGKIAIYDS NSEEKRIDVI KLPKTYDYDE QVLGETDDGS LQYGWSNKSV MEVWKLEKVG
NVLEWNLLFK VNFKAMWKMN QAVATRFSTW TKETQLLALF NQKSDLVYIR CDTQIFIYHT
ETKRVEVVQY QGRKSTLVWD FNKVVPYFRR TWPCSPLFEN NAMMIDTPQC NASSAGSN
