FB316_ARATH
ID FB316_ARATH Reviewed; 185 AA.
AC Q8GX77; F4HTJ7; O64786; Q84WH3;
DT 10-AUG-2010, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2003, sequence version 1.
DT 03-AUG-2022, entry version 98.
DE RecName: Full=F-box protein At1g61340;
GN OrderedLocusNames=At1g61340; ORFNames=T1F9.17;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences.;
CC Name=1;
CC IsoId=Q8GX77-1; Sequence=Displayed;
CC -!- SEQUENCE CAUTION:
CC Sequence=AAC13907.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC004255; AAC13907.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE33822.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE33823.2; -; Genomic_DNA.
DR EMBL; AK118391; BAC43001.1; -; mRNA.
DR EMBL; BT003706; AAO39934.1; -; mRNA.
DR RefSeq; NP_001319283.1; NM_001333950.1. [Q8GX77-1]
DR RefSeq; NP_176329.1; NM_104815.3. [Q8GX77-1]
DR AlphaFoldDB; Q8GX77; -.
DR BioGRID; 27651; 9.
DR IntAct; Q8GX77; 8.
DR PRIDE; Q8GX77; -.
DR ProteomicsDB; 230735; -. [Q8GX77-1]
DR EnsemblPlants; AT1G61340.1; AT1G61340.1; AT1G61340. [Q8GX77-1]
DR EnsemblPlants; AT1G61340.2; AT1G61340.2; AT1G61340. [Q8GX77-1]
DR GeneID; 842428; -.
DR Gramene; AT1G61340.1; AT1G61340.1; AT1G61340. [Q8GX77-1]
DR Gramene; AT1G61340.2; AT1G61340.2; AT1G61340. [Q8GX77-1]
DR KEGG; ath:AT1G61340; -.
DR Araport; AT1G61340; -.
DR TAIR; locus:2197659; AT1G61340.
DR InParanoid; Q8GX77; -.
DR OMA; GLEFVQY; -.
DR OrthoDB; 1450831at2759; -.
DR PhylomeDB; Q8GX77; -.
DR PRO; PR:Q8GX77; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q8GX77; baseline and differential.
DR Genevisible; Q8GX77; AT.
DR GO; GO:0071456; P:cellular response to hypoxia; HEP:TAIR.
DR GO; GO:0009961; P:response to 1-aminocyclopropane-1-carboxylic acid; IEP:TAIR.
DR GO; GO:0009737; P:response to abscisic acid; IEP:TAIR.
DR GO; GO:0009617; P:response to bacterium; IEP:TAIR.
DR GO; GO:0009753; P:response to jasmonic acid; IEP:TAIR.
DR GO; GO:0006970; P:response to osmotic stress; IEP:TAIR.
DR GO; GO:0009751; P:response to salicylic acid; IEP:TAIR.
DR GO; GO:0009651; P:response to salt stress; IEP:TAIR.
DR GO; GO:0009611; P:response to wounding; IEP:TAIR.
DR InterPro; IPR001810; F-box_dom.
DR InterPro; IPR045286; FBS1-like.
DR PANTHER; PTHR34049; PTHR34049; 1.
DR PROSITE; PS50181; FBOX; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Reference proteome.
FT CHAIN 1..185
FT /note="F-box protein At1g61340"
FT /id="PRO_0000396031"
FT DOMAIN 78..126
FT /note="F-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00080"
FT CONFLICT 17
FT /note="Q -> E (in Ref. 4; AAO39934)"
FT /evidence="ECO:0000305"
FT CONFLICT 143
FT /note="K -> N (in Ref. 4; AAO39934)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 185 AA; 21026 MW; E2949A304ECF6579 CRC64;
MALGKKRIVT QKPNLRQRRD VDNGGLGLGL EFVQYKRGFG RKRILISSGD EMEDSIFTSP
VGKKLCDDKT TSVAEGQSRE LEDLPLDILV RIICGVEHED LKQLFHVSKT IREATMIAKQ
SHFAYSTPRK TSVFHHGRFG WDKPFDVEDD DEEIEAPGAP LQKRYRLSRI NRNKDDSGVS
VALFH