FB348_ARATH
ID FB348_ARATH Reviewed; 778 AA.
AC Q84V03; Q1PF61; Q94B23; Q9SIW6;
DT 10-AUG-2010, integrated into UniProtKB/Swiss-Prot.
DT 10-AUG-2010, sequence version 2.
DT 25-MAY-2022, entry version 100.
DE RecName: Full=F-box protein At2g16365;
GN OrderedLocusNames=At2g16365; ORFNames=F16F14.15;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 434-778 (ISOFORM 1).
RC STRAIN=cv. Columbia;
RX PubMed=12481096; DOI=10.1104/pp.010207;
RA Xiao Y.-L., Malik M., Whitelaw C.A., Town C.D.;
RT "Cloning and sequencing of cDNAs for hypothetical genes from chromosome 2
RT of Arabidopsis.";
RL Plant Physiol. 130:2118-2128(2002).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 447-727 (ISOFORM 3).
RC STRAIN=cv. Columbia;
RX PubMed=17147637; DOI=10.1111/j.1467-7652.2006.00183.x;
RA Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.;
RT "Simultaneous high-throughput recombinational cloning of open reading
RT frames in closed and open configurations.";
RL Plant Biotechnol. J. 4:317-324(2006).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 447-778 (ISOFORM 1).
RC STRAIN=cv. Columbia;
RA Underwood B.A., Xiao Y.-L., Moskal W.A. Jr., Monaghan E.L., Wang W.,
RA Redman J.C., Wu H.C., Utterback T., Town C.D.;
RL Submitted (OCT-2004) to the EMBL/GenBank/DDBJ databases.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=3;
CC Name=1;
CC IsoId=Q84V03-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q84V03-2; Sequence=VSP_039574, VSP_039575;
CC Name=3;
CC IsoId=Q84V03-3; Sequence=VSP_039573, VSP_039576;
CC -!- SEQUENCE CAUTION:
CC Sequence=AAO73431.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
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DR EMBL; AC007047; AAD22304.2; -; Genomic_DNA.
DR EMBL; CP002685; AEC06484.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC06485.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC06486.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC06487.1; -; Genomic_DNA.
DR EMBL; CP002685; ANM61300.1; -; Genomic_DNA.
DR EMBL; CP002685; ANM61301.1; -; Genomic_DNA.
DR EMBL; AY042900; AAK68840.1; -; mRNA.
DR EMBL; BT006598; AAP31942.1; -; mRNA.
DR EMBL; AY227650; AAO73431.1; ALT_INIT; mRNA.
DR EMBL; DQ446505; ABE65815.1; -; mRNA.
DR EMBL; AY773845; AAV63874.1; -; mRNA.
DR PIR; C84539; C84539.
DR RefSeq; NP_001118328.1; NM_001124856.2. [Q84V03-1]
DR RefSeq; NP_001118329.1; NM_001124857.2. [Q84V03-3]
DR RefSeq; NP_001323527.1; NM_001335470.1. [Q84V03-2]
DR RefSeq; NP_001323528.1; NM_001335471.1. [Q84V03-2]
DR RefSeq; NP_671856.2; NM_147321.2. [Q84V03-1]
DR RefSeq; NP_973716.1; NM_201987.2. [Q84V03-2]
DR AlphaFoldDB; Q84V03; -.
DR BioGRID; 1491; 18.
DR STRING; 3702.AT2G16365.1; -.
DR PaxDb; Q84V03; -.
DR PRIDE; Q84V03; -.
DR ProteomicsDB; 230884; -. [Q84V03-1]
DR EnsemblPlants; AT2G16365.1; AT2G16365.1; AT2G16365. [Q84V03-1]
DR EnsemblPlants; AT2G16365.2; AT2G16365.2; AT2G16365. [Q84V03-2]
DR EnsemblPlants; AT2G16365.3; AT2G16365.3; AT2G16365. [Q84V03-1]
DR EnsemblPlants; AT2G16365.4; AT2G16365.4; AT2G16365. [Q84V03-3]
DR EnsemblPlants; AT2G16365.5; AT2G16365.5; AT2G16365. [Q84V03-2]
DR EnsemblPlants; AT2G16365.6; AT2G16365.6; AT2G16365. [Q84V03-2]
DR GeneID; 816133; -.
DR Gramene; AT2G16365.1; AT2G16365.1; AT2G16365. [Q84V03-1]
DR Gramene; AT2G16365.2; AT2G16365.2; AT2G16365. [Q84V03-2]
DR Gramene; AT2G16365.3; AT2G16365.3; AT2G16365. [Q84V03-1]
DR Gramene; AT2G16365.4; AT2G16365.4; AT2G16365. [Q84V03-3]
DR Gramene; AT2G16365.5; AT2G16365.5; AT2G16365. [Q84V03-2]
DR Gramene; AT2G16365.6; AT2G16365.6; AT2G16365. [Q84V03-2]
DR KEGG; ath:AT2G16365; -.
DR Araport; AT2G16365; -.
DR TAIR; locus:504956066; AT2G16365.
DR eggNOG; ENOG502QVXQ; Eukaryota.
DR HOGENOM; CLU_381014_0_0_1; -.
DR InParanoid; Q84V03; -.
DR OMA; HESAWLG; -.
DR OrthoDB; 731959at2759; -.
DR PRO; PR:Q84V03; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q84V03; baseline and differential.
DR Genevisible; Q84V03; AT.
DR GO; GO:0005634; C:nucleus; IDA:TAIR.
DR GO; GO:0009658; P:chloroplast organization; IMP:TAIR.
DR GO; GO:0007623; P:circadian rhythm; IEP:TAIR.
DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IMP:TAIR.
DR GO; GO:0010099; P:regulation of photomorphogenesis; IGI:TAIR.
DR InterPro; IPR036047; F-box-like_dom_sf.
DR InterPro; IPR001810; F-box_dom.
DR InterPro; IPR037476; PCH1.
DR PANTHER; PTHR36062; PTHR36062; 2.
DR Pfam; PF00646; F-box; 1.
DR SMART; SM00256; FBOX; 1.
DR SUPFAM; SSF81383; SSF81383; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Reference proteome.
FT CHAIN 1..778
FT /note="F-box protein At2g16365"
FT /id="PRO_0000396064"
FT DOMAIN 470..505
FT /note="F-box"
FT REGION 74..95
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 186..283
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 316..335
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 74..91
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 212..242
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 455..458
FT /note="Missing (in isoform 3)"
FT /evidence="ECO:0000303|PubMed:17147637"
FT /id="VSP_039573"
FT VAR_SEQ 455
FT /note="S -> R (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:14593172"
FT /id="VSP_039574"
FT VAR_SEQ 456..778
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:14593172"
FT /id="VSP_039575"
FT VAR_SEQ 515..561
FT /note="Missing (in isoform 3)"
FT /evidence="ECO:0000303|PubMed:17147637"
FT /id="VSP_039576"
SQ SEQUENCE 778 AA; 88623 MW; DC34D0EDACE92DF5 CRC64;
MSEHVMVLGK GNKGISKNSS VNPYESAWLG RWTQSGSEVK FHDGETNCSK QLIRPEDENH
GVEVLPFPMF KVSQKRETTT TTTTKPSFHE DVGSSSRAMV NRMPWMYPQG ENFSSSNRLD
FPIQEKTTQN LLELIRPVRI YATVDSVNLP KEDSHQLLKG STVSMKLKGK IFGGYLDLFP
NQDHSHNRGG VRLQSLESSK DTQEDGPRKN ESSAETNTLE MDRLQTIHLS GSISSSSTKG
KGIKGYSAIP RTEIPDMNEE PPLVPDRENS VDGHQGETSN SATQSMNVEH FLSRDCKRVR
LEPEVEASSR WVKRLKTSPS DSSETKSMMK MKEASLGEKE NNNLFLEILK SGINNLQPRN
QEPVVSQSND LRQGGDDITL LHPWIQRWCK KKTTSTDQPT GQEASFEPES HKEFEKKQYP
SIAAMALMGK ALSGLNPYGL RKTNSLMVWN ARDLSFTYRS LRWNLTMADW PLLPNDLLEL
IMGHLETSFE IFLFRSVCSS WRSVVPPLDH SRCLGIKTHD ISFNVGFSFN GRPTNEYCTL
KKIPIYLVKF WTPFGDDYLL AEMRERNDGE PKLLLSPLSS NGIKYGMGIN KVLFNSLTSP
IIPFGQYYEI TYIEKRPSEY RFGFPYKLEW VEITERVEFL KLDSEDSRDF AVLFAGRMCN
LVMYRSRNMS WTQVVEHPEK YAYQDLVAFK GKFYAVDSSG RGRVFVVELS FEVTEIPSVG
GSQQSSKESL VQSGEELLLV QRFTPVGRRY DEYIYIHGSE CLDLMKKEER ESGFKLMT
