FBD35_ARATH
ID FBD35_ARATH Reviewed; 420 AA.
AC Q9ZV91; F4IBU3; Q0WU87;
DT 10-AUG-2010, integrated into UniProtKB/Swiss-Prot.
DT 25-JAN-2012, sequence version 2.
DT 03-AUG-2022, entry version 109.
DE RecName: Full=Putative FBD-associated F-box protein At1g78730;
GN OrderedLocusNames=At1g78730; ORFNames=F9K20.23;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q9ZV91-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q9ZV91-2; Sequence=VSP_039567, VSP_039568, VSP_039569;
CC -!- SEQUENCE CAUTION:
CC Sequence=AAC83036.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC005679; AAC83036.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE36144.1; -; Genomic_DNA.
DR EMBL; AK227293; BAE99311.1; -; mRNA.
DR PIR; C96816; C96816.
DR RefSeq; NP_177994.2; NM_106520.3. [Q9ZV91-1]
DR AlphaFoldDB; Q9ZV91; -.
DR STRING; 3702.AT1G78730.1; -.
DR PaxDb; Q9ZV91; -.
DR PRIDE; Q9ZV91; -.
DR EnsemblPlants; AT1G78730.1; AT1G78730.1; AT1G78730. [Q9ZV91-1]
DR GeneID; 844209; -.
DR Gramene; AT1G78730.1; AT1G78730.1; AT1G78730. [Q9ZV91-1]
DR KEGG; ath:AT1G78730; -.
DR Araport; AT1G78730; -.
DR TAIR; locus:2037613; AT1G78730.
DR HOGENOM; CLU_010721_1_3_1; -.
DR InParanoid; Q9ZV91; -.
DR OMA; CHETASF; -.
DR OrthoDB; 686125at2759; -.
DR PRO; PR:Q9ZV91; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9ZV91; baseline and differential.
DR Gene3D; 3.80.10.10; -; 1.
DR InterPro; IPR036047; F-box-like_dom_sf.
DR InterPro; IPR001810; F-box_dom.
DR InterPro; IPR006566; FBD.
DR InterPro; IPR013101; Leu-rich_rpt_2.
DR InterPro; IPR032675; LRR_dom_sf.
DR Pfam; PF00646; F-box; 1.
DR Pfam; PF08387; FBD; 1.
DR Pfam; PF07723; LRR_2; 1.
DR SMART; SM00579; FBD; 1.
DR SMART; SM00256; FBOX; 1.
DR SUPFAM; SSF81383; SSF81383; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Reference proteome.
FT CHAIN 1..420
FT /note="Putative FBD-associated F-box protein At1g78730"
FT /id="PRO_0000396022"
FT DOMAIN 21..71
FT /note="F-box"
FT DOMAIN 341..390
FT /note="FBD"
FT VAR_SEQ 1..154
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|Ref.3"
FT /id="VSP_039567"
FT VAR_SEQ 331..338
FT /note="GFSKTPGE -> VFLESGRN (in isoform 2)"
FT /evidence="ECO:0000303|Ref.3"
FT /id="VSP_039568"
FT VAR_SEQ 339..420
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|Ref.3"
FT /id="VSP_039569"
SQ SEQUENCE 420 AA; 48280 MW; 89508346AE63A940 CRC64;
MDEDAESRVS STRSYDRRGH LDWLRKLPDS LLCQVFLNLP TKDVVKTSVL SSTWGNIWRS
VPGLDLGYGD FPEYNAFVSF VDSFLGFNSE SRLQNFKLNY QYLRLKYEWK WTELDNANVT
RWINTVIKRK VEHLHLSDVT FSNPESVSLP CVKVMYLDMV KFANDLAFEM LISGCPVLES
LTIKRSACDN VDYLRVCSQS LLSFTLVGHC NEDMVKEQVV AIDAPRLEDL KLYCHETASF
IIKNPASLVK MDIDIMFNLS SEQKFDPNDL PKRNMIRNFL LGISGVKEME ISSHTLEVIY
NYSRCERLPV FRNLSSLHAD FDDYRWEMLP GFSKTPGEEP ISILPGPQCN LPALEFVDIL
KPMVEKETEL KLMSYFLEKS TILKKLTLRL GDFRGNEESA LLKKLLTIPR LSSSCQVVVL
