FBD38_ARATH
ID FBD38_ARATH Reviewed; 439 AA.
AC Q9FM93;
DT 10-AUG-2010, integrated into UniProtKB/Swiss-Prot.
DT 10-AUG-2010, sequence version 2.
DT 03-AUG-2022, entry version 102.
DE RecName: Full=FBD-associated F-box protein At5g56380;
GN OrderedLocusNames=At5g56380; ORFNames=MCD7.14;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9628582; DOI=10.1093/dnares/5.1.41;
RA Sato S., Kaneko T., Kotani H., Nakamura Y., Asamizu E., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. IV. Sequence
RT features of the regions of 1,456,315 bp covered by nineteen physically
RT assigned P1 and TAC clones.";
RL DNA Res. 5:41-54(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14993207; DOI=10.1101/gr.1515604;
RA Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M.,
RA Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., Caboche M.,
RA Weissenbach J., Salanoubat M.;
RT "Whole genome sequence comparisons and 'full-length' cDNA sequences: a
RT combined approach to evaluate and improve Arabidopsis genome annotation.";
RL Genome Res. 14:406-413(2004).
CC -!- SEQUENCE CAUTION:
CC Sequence=BAB11266.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
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DR EMBL; AB009049; BAB11266.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002688; AED96758.1; -; Genomic_DNA.
DR EMBL; CP002688; ANM71212.1; -; Genomic_DNA.
DR EMBL; BX831314; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; NP_001332756.1; NM_001345198.1.
DR RefSeq; NP_200449.2; NM_125021.4.
DR AlphaFoldDB; Q9FM93; -.
DR PaxDb; Q9FM93; -.
DR PRIDE; Q9FM93; -.
DR ProteomicsDB; 222538; -.
DR EnsemblPlants; AT5G56380.1; AT5G56380.1; AT5G56380.
DR EnsemblPlants; AT5G56380.2; AT5G56380.2; AT5G56380.
DR GeneID; 835739; -.
DR Gramene; AT5G56380.1; AT5G56380.1; AT5G56380.
DR Gramene; AT5G56380.2; AT5G56380.2; AT5G56380.
DR KEGG; ath:AT5G56380; -.
DR Araport; AT5G56380; -.
DR TAIR; locus:2161098; AT5G56380.
DR eggNOG; ENOG502R66V; Eukaryota.
DR HOGENOM; CLU_010721_1_2_1; -.
DR InParanoid; Q9FM93; -.
DR OMA; FFEMEIA; -.
DR OrthoDB; 686125at2759; -.
DR PhylomeDB; Q9FM93; -.
DR PRO; PR:Q9FM93; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FM93; baseline and differential.
DR Genevisible; Q9FM93; AT.
DR Gene3D; 3.80.10.10; -; 1.
DR InterPro; IPR036047; F-box-like_dom_sf.
DR InterPro; IPR001810; F-box_dom.
DR InterPro; IPR006566; FBD.
DR InterPro; IPR013101; Leu-rich_rpt_2.
DR InterPro; IPR032675; LRR_dom_sf.
DR Pfam; PF00646; F-box; 1.
DR Pfam; PF08387; FBD; 1.
DR Pfam; PF07723; LRR_2; 1.
DR SMART; SM00579; FBD; 1.
DR SUPFAM; SSF81383; SSF81383; 1.
PE 2: Evidence at transcript level;
KW Reference proteome.
FT CHAIN 1..439
FT /note="FBD-associated F-box protein At5g56380"
FT /id="PRO_0000396025"
FT DOMAIN 1..61
FT /note="F-box"
FT DOMAIN 358..406
FT /note="FBD"
FT CONFLICT 4
FT /note="I -> V (in Ref. 3; BX831314)"
FT /evidence="ECO:0000305"
FT CONFLICT 22
FT /note="K -> R (in Ref. 3; BX831314)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 439 AA; 49904 MW; 18E8F77C1DE3A941 CRC64;
MDRISHLADE ILSKILSFLG TKDVMQTMLL SKRFKSQWLL VPKLEFDDST HLPETWGYQE
PDYGNFRRFV DRSLLSREGR VLQTLFLKLG RQCSYDDIAI WVGIAVKRGL MELKLKYTDS
YYPKRSSLPR SLYTCETLVV LKLKKGYLDV PDLVCLRSLK TLSLRDMNYS NASCLLRLLA
SCPVLEELFI QQGYYDSCAL SFKIILPCLK KLSYLPKRKK KYSGIDRSEV SGGISGLVLD
APSLKYLHIV DRSGLFSVSE IININAVVKA TLEVNASRPE KLLYSLVSVE HIRLCLSATE
VVYPVGLGSS FHKLKRLEVC TCKSEWLDLF IHLLEDSPSL QDIKINQCHP VTNPRPQWNQ
PGSVPRCLSS SLETLEWVEY GGTHEEKELS TYLFKTAVCF KKASFTAKWS GGDANKKLQM
LQELALSPRV SPTCELVFN