FBD40_ARATH
ID FBD40_ARATH Reviewed; 409 AA.
AC Q9SV82;
DT 03-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT 03-APR-2007, sequence version 2.
DT 03-AUG-2022, entry version 116.
DE RecName: Full=FBD-associated F-box protein At4g10400;
GN OrderedLocusNames=At4g10400; ORFNames=F24G24.200;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 2-326 (ISOFORM 2).
RC STRAIN=cv. Columbia;
RG Center for eukaryotic structural genomics (CESG);
RL Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q9SV82-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q9SV82-2; Sequence=VSP_024320;
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DR EMBL; AL049488; CAB39793.1; -; Genomic_DNA.
DR EMBL; AL161517; CAB78163.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE82876.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE82877.1; -; Genomic_DNA.
DR EMBL; CP002687; ANM67792.1; -; Genomic_DNA.
DR EMBL; BT011990; -; NOT_ANNOTATED_CDS; mRNA.
DR PIR; T04055; T04055.
DR RefSeq; NP_001078367.1; NM_001084898.2. [Q9SV82-1]
DR RefSeq; NP_001319893.1; NM_001340663.1. [Q9SV82-1]
DR RefSeq; NP_192778.2; NM_117108.5. [Q9SV82-1]
DR AlphaFoldDB; Q9SV82; -.
DR BioGRID; 11931; 4.
DR IntAct; Q9SV82; 1.
DR STRING; 3702.AT4G10400.1; -.
DR iPTMnet; Q9SV82; -.
DR PaxDb; Q9SV82; -.
DR PRIDE; Q9SV82; -.
DR ProteomicsDB; 232052; -. [Q9SV82-1]
DR DNASU; 826632; -.
DR EnsemblPlants; AT4G10400.1; AT4G10400.1; AT4G10400. [Q9SV82-1]
DR EnsemblPlants; AT4G10400.2; AT4G10400.2; AT4G10400. [Q9SV82-1]
DR EnsemblPlants; AT4G10400.3; AT4G10400.3; AT4G10400. [Q9SV82-1]
DR GeneID; 826632; -.
DR Gramene; AT4G10400.1; AT4G10400.1; AT4G10400. [Q9SV82-1]
DR Gramene; AT4G10400.2; AT4G10400.2; AT4G10400. [Q9SV82-1]
DR Gramene; AT4G10400.3; AT4G10400.3; AT4G10400. [Q9SV82-1]
DR KEGG; ath:AT4G10400; -.
DR Araport; AT4G10400; -.
DR TAIR; locus:2122754; AT4G10400.
DR HOGENOM; CLU_010721_1_2_1; -.
DR InParanoid; Q9SV82; -.
DR OMA; YCSESEW; -.
DR PhylomeDB; Q9SV82; -.
DR PRO; PR:Q9SV82; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q9SV82; baseline and differential.
DR Genevisible; Q9SV82; AT.
DR Gene3D; 3.80.10.10; -; 1.
DR InterPro; IPR036047; F-box-like_dom_sf.
DR InterPro; IPR001810; F-box_dom.
DR InterPro; IPR006566; FBD.
DR InterPro; IPR013101; Leu-rich_rpt_2.
DR InterPro; IPR032675; LRR_dom_sf.
DR Pfam; PF00646; F-box; 1.
DR Pfam; PF08387; FBD; 1.
DR Pfam; PF07723; LRR_2; 1.
DR SMART; SM00579; FBD; 1.
DR SUPFAM; SSF81383; SSF81383; 1.
DR PROSITE; PS50181; FBOX; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Reference proteome.
FT CHAIN 1..409
FT /note="FBD-associated F-box protein At4g10400"
FT /id="PRO_0000283497"
FT DOMAIN 1..47
FT /note="F-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00080"
FT DOMAIN 330..379
FT /note="FBD"
FT VAR_SEQ 322..409
FT /note="DHENLGMLSWNQPSIVPECMLSSLQKFTWFKYLGRPQDRDIAVYILKNACRL
FT RTATIKSDTRLFTKLEMITELRLSSQASSTCELNFS -> VSFFH (in isoform
FT 2)"
FT /evidence="ECO:0000303|Ref.3"
FT /id="VSP_024320"
FT CONFLICT 299
FT /note="N -> K (in Ref. 3; BT011990)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 409 AA; 47053 MW; 2879280BC9782185 CRC64;
MDRISGLPDE VLVKILSFVP TKVAVSTSIL SKRWEFLWMW LTKLKFGSKR YSESEFKRLQ
CFLDRNLPLH RAPVIESFRL VLSDSHFKPE DIRMWVVVAV SRYIRELKIY SSHYGEKQNI
LPSSLYTCKS LVILKLDGGV LLDVPRMVCL PSLKTLELKG VRYFKQGSLQ RLLCNCPVLE
DLVVNLSHHD NMGKLTVIVP SLQRLSLSTP SSREFVIDTP SLLSFQLVDR NDNSHTFLIE
NMPKLREAYI NVPFADIKSL IGSITSVKRL AISSEVGYGE GFIFNHLEEL TLWNKYSSNL
LVWFLKNSPN LRELMLVSET DDHENLGMLS WNQPSIVPEC MLSSLQKFTW FKYLGRPQDR
DIAVYILKNA CRLRTATIKS DTRLFTKLEM ITELRLSSQA SSTCELNFS
