FBD41_ARATH
ID FBD41_ARATH Reviewed; 441 AA.
AC Q56YH2; F4JY47;
DT 03-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT 16-NOV-2011, sequence version 2.
DT 03-AUG-2022, entry version 98.
DE RecName: Full=FBD-associated F-box protein At5g18780;
GN OrderedLocusNames=At5g18780; ORFNames=F17K4.30;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q56YH2-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q56YH2-2; Sequence=VSP_042041, VSP_042042;
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AC068655; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002688; AED92610.1; -; Genomic_DNA.
DR EMBL; CP002688; AED92611.1; -; Genomic_DNA.
DR EMBL; AK221350; BAD94200.1; -; mRNA.
DR EMBL; AK230408; BAF02206.1; -; mRNA.
DR RefSeq; NP_001190332.1; NM_001203403.2. [Q56YH2-1]
DR RefSeq; NP_197379.1; NM_121883.3. [Q56YH2-1]
DR AlphaFoldDB; Q56YH2; -.
DR iPTMnet; Q56YH2; -.
DR PaxDb; Q56YH2; -.
DR PRIDE; Q56YH2; -.
DR EnsemblPlants; AT5G18780.1; AT5G18780.1; AT5G18780. [Q56YH2-1]
DR EnsemblPlants; AT5G18780.2; AT5G18780.2; AT5G18780. [Q56YH2-1]
DR GeneID; 831996; -.
DR Gramene; AT5G18780.1; AT5G18780.1; AT5G18780. [Q56YH2-1]
DR Gramene; AT5G18780.2; AT5G18780.2; AT5G18780. [Q56YH2-1]
DR KEGG; ath:AT5G18780; -.
DR Araport; AT5G18780; -.
DR TAIR; locus:2144905; AT5G18780.
DR HOGENOM; CLU_010721_1_3_1; -.
DR InParanoid; Q56YH2; -.
DR OMA; SLCQLVI; -.
DR OrthoDB; 686125at2759; -.
DR PRO; PR:Q56YH2; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q56YH2; baseline and differential.
DR Genevisible; Q56YH2; AT.
DR Gene3D; 3.80.10.10; -; 1.
DR InterPro; IPR036047; F-box-like_dom_sf.
DR InterPro; IPR001810; F-box_dom.
DR InterPro; IPR006566; FBD.
DR InterPro; IPR032675; LRR_dom_sf.
DR Pfam; PF00646; F-box; 1.
DR Pfam; PF08387; FBD; 1.
DR SMART; SM00579; FBD; 1.
DR SUPFAM; SSF81383; SSF81383; 1.
DR PROSITE; PS50181; FBOX; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Reference proteome.
FT CHAIN 1..441
FT /note="FBD-associated F-box protein At5g18780"
FT /id="PRO_0000283528"
FT DOMAIN 10..56
FT /note="F-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00080"
FT DOMAIN 366..410
FT /note="FBD"
FT VAR_SEQ 300..308
FT /note="FIYRHLELK -> VYILSTNTH (in isoform 2)"
FT /evidence="ECO:0000303|Ref.3"
FT /id="VSP_042041"
FT VAR_SEQ 309..441
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|Ref.3"
FT /id="VSP_042042"
SQ SEQUENCE 441 AA; 50221 MW; 2B93095CA2623781 CRC64;
MQGRVRGSGE DRISILPEPL LCHILSFLRT KDSVRTSVLS SRWRDLWLWV PRLDLDKSDF
SDDNPSASFV DKFLNFRGES YLRGFKLNTD HDVYDISTLD ACLMRLDKCK IQHFEIENCF
GFCILLMPLI IPMCHTLVSL KLSFVILSKF GSLSLPCLEI MHFEKVIFPS DKSAEVLIAC
SPVLRDLRIS QSGDDAVEVL RVCSASLKSF TLKRTDHDYV GNGEYTVVID TPRLEYLNLK
DYQCQGFKIV SMSEYVRVHV DVVFEVIGGT VLSKRNIICD FLSCVSNVRY MTISRRSLEF
IYRHLELKPR FKFHDLARLR ATMFSNSSPE MLPVILETCP NLKHLTLELV HDSLVTEGTS
GLLTVLPRCL ISSLASVDIE SPITDKATEL KLVSYLLENS TTLKKLVLRL NQSCRDKYEP
GLLKQVLQSP RCSSLCQLVI L
