FBD7_ARATH
ID FBD7_ARATH Reviewed; 405 AA.
AC Q84X02; O81021; Q1PEZ7; Q84X03;
DT 03-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT 03-APR-2007, sequence version 2.
DT 03-AUG-2022, entry version 107.
DE RecName: Full=FBD-associated F-box protein At2g26860;
GN OrderedLocusNames=At2g26860; ORFNames=F12C20.10;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
RC STRAIN=cv. Columbia;
RX PubMed=16244158; DOI=10.1104/pp.105.063479;
RA Xiao Y.-L., Smith S.R., Ishmael N., Redman J.C., Kumar N., Monaghan E.L.,
RA Ayele M., Haas B.J., Wu H.C., Town C.D.;
RT "Analysis of the cDNAs of hypothetical genes on Arabidopsis chromosome 2
RT reveals numerous transcript variants.";
RL Plant Physiol. 139:1323-1337(2005).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC STRAIN=cv. Columbia;
RX PubMed=17147637; DOI=10.1111/j.1467-7652.2006.00183.x;
RA Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.;
RT "Simultaneous high-throughput recombinational cloning of open reading
RT frames in closed and open configurations.";
RL Plant Biotechnol. J. 4:317-324(2006).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q84X02-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q84X02-2; Sequence=VSP_024312, VSP_024313;
CC -!- SEQUENCE CAUTION:
CC Sequence=ABE65865.1; Type=Frameshift; Evidence={ECO:0000305};
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DR EMBL; AC005168; AAC32239.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC07899.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC07900.2; -; Genomic_DNA.
DR EMBL; AY219106; AAO37193.1; -; mRNA.
DR EMBL; AY219107; AAO37194.1; -; mRNA.
DR EMBL; DQ446570; ABE65865.1; ALT_FRAME; mRNA.
DR PIR; T02649; T02649.
DR RefSeq; NP_001318294.1; NM_001336095.1. [Q84X02-1]
DR RefSeq; NP_180254.1; NM_128243.5. [Q84X02-1]
DR AlphaFoldDB; Q84X02; -.
DR BioGRID; 2579; 2.
DR STRING; 3702.AT2G26860.1; -.
DR PaxDb; Q84X02; -.
DR PRIDE; Q84X02; -.
DR ProteomicsDB; 230819; -. [Q84X02-1]
DR EnsemblPlants; AT2G26860.1; AT2G26860.1; AT2G26860. [Q84X02-1]
DR EnsemblPlants; AT2G26860.2; AT2G26860.2; AT2G26860. [Q84X02-1]
DR GeneID; 817227; -.
DR Gramene; AT2G26860.1; AT2G26860.1; AT2G26860. [Q84X02-1]
DR Gramene; AT2G26860.2; AT2G26860.2; AT2G26860. [Q84X02-1]
DR KEGG; ath:AT2G26860; -.
DR Araport; AT2G26860; -.
DR TAIR; locus:2039488; AT2G26860.
DR HOGENOM; CLU_010721_1_2_1; -.
DR InParanoid; Q84X02; -.
DR OMA; YPDEETC; -.
DR OrthoDB; 686125at2759; -.
DR PhylomeDB; Q84X02; -.
DR PRO; PR:Q84X02; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q84X02; baseline and differential.
DR Gene3D; 3.80.10.10; -; 1.
DR InterPro; IPR036047; F-box-like_dom_sf.
DR InterPro; IPR001810; F-box_dom.
DR InterPro; IPR006566; FBD.
DR InterPro; IPR013101; Leu-rich_rpt_2.
DR InterPro; IPR032675; LRR_dom_sf.
DR Pfam; PF00646; F-box; 1.
DR Pfam; PF08387; FBD; 1.
DR Pfam; PF07723; LRR_2; 1.
DR SMART; SM00256; FBOX; 1.
DR SUPFAM; SSF81383; SSF81383; 1.
DR PROSITE; PS50181; FBOX; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Reference proteome.
FT CHAIN 1..405
FT /note="FBD-associated F-box protein At2g26860"
FT /id="PRO_0000283140"
FT DOMAIN 1..47
FT /note="F-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00080"
FT DOMAIN 347..398
FT /note="FBD"
FT VAR_SEQ 334..355
FT /note="GEPSFDEEFEHVSWIYNDESSV -> VSFFIGNLKALVLLIISFLTKI (in
FT isoform 2)"
FT /evidence="ECO:0000303|PubMed:16244158"
FT /id="VSP_024312"
FT VAR_SEQ 356..405
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:16244158"
FT /id="VSP_024313"
FT CONFLICT 303
FT /note="N -> D (in Ref. 3; AAO37193)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 405 AA; 47051 MW; B83D7C3CE480D987 CRC64;
MDRISGLPDE LLVEILHCLP TKEVVSTSIL SKRWEFLWLW VPKLTFVMNH YESDLPIQDF
ITKNLRLLKP QVIESFHLQC FSSSFKPEDI KHWVVTTISR RVRELIINYC DLSWLDKPVV
LLDLPNSLYT CTSLVTLKLI GHSIIVDVPR TVSLPCLKTL ELDSVAYSNE ESLRLLLSYC
PVLEDLTIHR DMHDNVKTLV IIVPSLLRLN LPIDGAYSCD GYVIVTPALK YLKVPGLYRE
DFSYLLTHMP NVEEADLSVE QDVERLFESI TSVKRLSLFV LLDIEDESMY HNGIYFNQLE
HLNLHIYRDN WSKLLVRLLE DSPKLRVLKI VVDGEPSFDE EFEHVSWIYN DESSVPKCLL
DSLEVFEFAG YTRRPEERDF VSFILKHACH LKSSSISRLS CYVLE
