FBK83_ARATH
ID FBK83_ARATH Reviewed; 383 AA.
AC O65704; C6EMZ0;
DT 03-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT 28-FEB-2018, sequence version 2.
DT 03-AUG-2022, entry version 121.
DE RecName: Full=F-box/kelch-repeat protein At4g19330;
DE AltName: Full=Protein COLD TEMPERATURE GERMINATING 10 {ECO:0000312|EMBL:ABG75719.1};
GN Name=CTG10 {ECO:0000312|EMBL:ABG75719.1}; OrderedLocusNames=At4g19330;
GN ORFNames=T5K18.110 {ECO:0000312|EMBL:CAA18620.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND FUNCTION.
RX DOI=10.1016/j.plgene.2017.05.012;
RA Majee M., Wu S., Salaita L., Chappell J., Gingerich D., Dirk L.M.A.,
RA Chappell J., Hunt A.G., Vierstra R., Downie B.;
RT "A misannotated locus positively influencing Arabidopsis seed germination
RT is deconvoluted using multiple methods, including surrogate splicing.";
RL Plant Gene 10:74-85(2017).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
CC -!- FUNCTION: Involved in seed germination. {ECO:0000269|Ref.1}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAA18620.1; Type=Erroneous gene model prediction; Note=The predicted gene has been split into 2 genes: At4g19275 and At4g19330.; Evidence={ECO:0000303|Ref.1};
CC Sequence=CAB78935.1; Type=Erroneous gene model prediction; Note=The predicted gene has been split into 2 genes: At4g19275 and At4g19330.; Evidence={ECO:0000303|Ref.1};
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DR EMBL; DQ666277; ABG75719.1; -; Genomic_DNA.
DR EMBL; AL022580; CAA18620.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AL161550; CAB78935.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002687; AEE84168.2; -; Genomic_DNA.
DR PIR; T05816; T05816.
DR RefSeq; NP_001319995.1; NM_001341333.1.
DR AlphaFoldDB; O65704; -.
DR SMR; O65704; -.
DR STRING; 3702.AT4G19330.1; -.
DR PaxDb; O65704; -.
DR PRIDE; O65704; -.
DR EnsemblPlants; AT4G19330.1; AT4G19330.1; AT4G19330.
DR GeneID; 28720147; -.
DR Gramene; AT4G19330.1; AT4G19330.1; AT4G19330.
DR KEGG; ath:AT4G19330; -.
DR Araport; AT4G19330; -.
DR TAIR; locus:2140336; AT4G19330.
DR eggNOG; KOG1072; Eukaryota.
DR eggNOG; KOG1073; Eukaryota.
DR HOGENOM; CLU_524158_0_0_1; -.
DR InParanoid; O65704; -.
DR OMA; SGESECW; -.
DR OrthoDB; 913769at2759; -.
DR PhylomeDB; O65704; -.
DR PRO; PR:O65704; -.
DR Proteomes; UP000006548; Chromosome 4.
DR Genevisible; O65704; AT.
DR GO; GO:0009409; P:response to cold; IMP:UniProtKB.
DR GO; GO:0009845; P:seed germination; IMP:UniProtKB.
DR Gene3D; 2.120.10.80; -; 1.
DR InterPro; IPR036047; F-box-like_dom_sf.
DR InterPro; IPR001810; F-box_dom.
DR InterPro; IPR015915; Kelch-typ_b-propeller.
DR InterPro; IPR006652; Kelch_1.
DR Pfam; PF00646; F-box; 1.
DR Pfam; PF01344; Kelch_1; 2.
DR SMART; SM00256; FBOX; 1.
DR SMART; SM00612; Kelch; 2.
DR SUPFAM; SSF117281; SSF117281; 1.
DR SUPFAM; SSF81383; SSF81383; 1.
DR PROSITE; PS50181; FBOX; 1.
PE 4: Predicted;
KW Kelch repeat; Reference proteome; Repeat.
FT CHAIN 1..383
FT /note="F-box/kelch-repeat protein At4g19330"
FT /id="PRO_0000283243"
FT DOMAIN 28..79
FT /note="F-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00080"
FT REPEAT 147..192
FT /note="Kelch 1"
FT /evidence="ECO:0000255"
FT REPEAT 193..239
FT /note="Kelch 2"
FT /evidence="ECO:0000255"
FT REPEAT 272..318
FT /note="Kelch 3"
FT /evidence="ECO:0000255"
FT REGION 1..27
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 383 AA; 44319 MW; 729EFBD7BA50C525 CRC64;
MAYLSFKSNM ERTPRESNTP CPPPQPSPSL FSSLPDDIVL NILARISTSY YQTLSLVSKT
FRLLILSKEL DMERSYLGTR KPCVYVCLQS PTHPFDRRWF GLWIKPYDHQ PLTHWTIDIK
CTGHWLLPMP SPYSRCLQIV HETVGSETYE IGGQNMTPST DVWVYDKLIG KQRKAPSMMV
ARKNAFTCVL DGKLYVMGGC EADESTHWAE VFDPKTQTWE ALPDPGVELR YSSVKNIQTK
QGKVYVRSNK KNFVYLIKEC MWEVAEENLG ESTCEIENVC YCYSNKRYWW YDAKCEEWRL
VKGVSGLYEY YKTDSEIGNY GGKLVVFWDR AVSRLTATKE IWCAMISLEK GHDGEIWGHI
EWLDAVLIAP RSYALSHCMD FLQ
