FBK9_ARATH
ID FBK9_ARATH Reviewed; 394 AA.
AC Q9LDE3; Q8LGH1;
DT 03-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 120.
DE RecName: Full=F-box/kelch-repeat protein At1g23390;
GN OrderedLocusNames=At1g23390; ORFNames=F26F24.26, F28C11.3;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; AC005292; AAF87006.1; -; Genomic_DNA.
DR EMBL; AC007945; AAF79597.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE30382.1; -; Genomic_DNA.
DR EMBL; AY120706; AAM53264.1; -; mRNA.
DR EMBL; BT000026; AAN15345.1; -; mRNA.
DR EMBL; AY084270; AAM67270.1; -; mRNA.
DR PIR; G86367; G86367.
DR RefSeq; NP_564193.1; NM_102188.3.
DR AlphaFoldDB; Q9LDE3; -.
DR BioGRID; 24186; 14.
DR IntAct; Q9LDE3; 2.
DR STRING; 3702.AT1G23390.1; -.
DR PaxDb; Q9LDE3; -.
DR PRIDE; Q9LDE3; -.
DR ProteomicsDB; 230695; -.
DR EnsemblPlants; AT1G23390.1; AT1G23390.1; AT1G23390.
DR GeneID; 838947; -.
DR Gramene; AT1G23390.1; AT1G23390.1; AT1G23390.
DR KEGG; ath:AT1G23390; -.
DR Araport; AT1G23390; -.
DR TAIR; locus:2028090; AT1G23390.
DR eggNOG; ENOG502RB6E; Eukaryota.
DR HOGENOM; CLU_057602_1_0_1; -.
DR InParanoid; Q9LDE3; -.
DR OMA; EKMYVTE; -.
DR OrthoDB; 995824at2759; -.
DR PhylomeDB; Q9LDE3; -.
DR PRO; PR:Q9LDE3; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9LDE3; baseline and differential.
DR Genevisible; Q9LDE3; AT.
DR GO; GO:0005737; C:cytoplasm; IDA:TAIR.
DR GO; GO:0005829; C:cytosol; IDA:TAIR.
DR GO; GO:0005634; C:nucleus; IDA:TAIR.
DR GO; GO:0043161; P:proteasome-mediated ubiquitin-dependent protein catabolic process; IMP:TAIR.
DR Gene3D; 2.120.10.80; -; 1.
DR InterPro; IPR036047; F-box-like_dom_sf.
DR InterPro; IPR001810; F-box_dom.
DR InterPro; IPR015915; Kelch-typ_b-propeller.
DR Pfam; PF00646; F-box; 1.
DR SMART; SM00256; FBOX; 1.
DR SUPFAM; SSF117281; SSF117281; 1.
DR SUPFAM; SSF81383; SSF81383; 1.
PE 2: Evidence at transcript level;
KW Kelch repeat; Reference proteome; Repeat.
FT CHAIN 1..394
FT /note="F-box/kelch-repeat protein At1g23390"
FT /id="PRO_0000283175"
FT DOMAIN 15..62
FT /note="F-box"
FT REPEAT 65..111
FT /note="Kelch 1"
FT REPEAT 155..204
FT /note="Kelch 2"
FT REPEAT 206..252
FT /note="Kelch 3"
FT REPEAT 321..369
FT /note="Kelch 4"
FT CONFLICT 17..18
FT /note="ES -> QR (in Ref. 4; AAM67270)"
FT /evidence="ECO:0000305"
FT CONFLICT 41
FT /note="C -> S (in Ref. 4; AAM67270)"
FT /evidence="ECO:0000305"
FT CONFLICT 95
FT /note="N -> K (in Ref. 4; AAM67270)"
FT /evidence="ECO:0000305"
FT CONFLICT 138
FT /note="A -> S (in Ref. 4; AAM67270)"
FT /evidence="ECO:0000305"
FT CONFLICT 261
FT /note="G -> W (in Ref. 4; AAM67270)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 394 AA; 43879 MW; B87A97A4F16882E8 CRC64;
MEKKKNNNNG GDFGEEESSI DGDILESILS YLPLLDLDSA CQVSKSWNRA VFYSLRRLKT
MPWLFVYNQR NSPPYTMATM AMAYDPKSEA WIELNTASSP VEHVSVARSS HSTLLYALSP
ARFSFSTDAF HLTWQHVAPP RVWRIDPIVA VVGRSLIIAG GVCDFEEDRF AVELFDIESG
DGAWERCESM PDFLYESASS TWLSVAVSSE KMYVTEKRSG VTCSFNPVTR SWTKLLDLCP
GECSLYSRSI GFSVNRLIMA GIIGDEYNPT GIELWEVIDS DESHLKFESI GSMPETYLEK
LRGINSDWPL TSIVLNAVGD MVYVHGAAEN GGEIVAAEIE GGKLCKWRTL PNADATWKKS
HAAERVIVAC SNVGFSDLKL AFRNNLSFLS TSKY
