FBL35_ARATH
ID FBL35_ARATH Reviewed; 352 AA.
AC Q1PEY8; Q8GUS8; Q8GUS9; Q9SIK6;
DT 03-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT 16-MAY-2006, sequence version 1.
DT 03-AUG-2022, entry version 94.
DE RecName: Full=F-box/LRR-repeat protein At2g29910;
GN OrderedLocusNames=At2g29910; ORFNames=F6K5.4;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
RC STRAIN=cv. Columbia;
RX PubMed=16244158; DOI=10.1104/pp.105.063479;
RA Xiao Y.-L., Smith S.R., Ishmael N., Redman J.C., Kumar N., Monaghan E.L.,
RA Ayele M., Haas B.J., Wu H.C., Town C.D.;
RT "Analysis of the cDNAs of hypothetical genes on Arabidopsis chromosome 2
RT reveals numerous transcript variants.";
RL Plant Physiol. 139:1323-1337(2005).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC STRAIN=cv. Columbia;
RX PubMed=17147637; DOI=10.1111/j.1467-7652.2006.00183.x;
RA Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.;
RT "Simultaneous high-throughput recombinational cloning of open reading
RT frames in closed and open configurations.";
RL Plant Biotechnol. J. 4:317-324(2006).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q1PEY8-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q1PEY8-2; Sequence=VSP_024103;
CC -!- MISCELLANEOUS: [Isoform 2]: May be due to intron retention.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAD23631.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC007113; AAD23631.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002685; AEC08319.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC08320.1; -; Genomic_DNA.
DR EMBL; CP002685; ANM61629.1; -; Genomic_DNA.
DR EMBL; CP002685; ANM61630.1; -; Genomic_DNA.
DR EMBL; CP002685; ANM61632.1; -; Genomic_DNA.
DR EMBL; CP002685; ANM61633.1; -; Genomic_DNA.
DR EMBL; AY169001; AAO11672.1; -; mRNA.
DR EMBL; AY169002; AAO11673.1; -; mRNA.
DR EMBL; DQ446579; ABE65873.1; -; mRNA.
DR PIR; B84702; B84702.
DR RefSeq; NP_001323834.1; NM_001336230.1. [Q1PEY8-1]
DR RefSeq; NP_001323835.1; NM_001336231.1. [Q1PEY8-1]
DR RefSeq; NP_001323837.1; NM_001336233.1. [Q1PEY8-1]
DR RefSeq; NP_001323838.1; NM_001336229.1. [Q1PEY8-2]
DR RefSeq; NP_180552.2; NM_128545.6. [Q1PEY8-1]
DR RefSeq; NP_850138.1; NM_179807.3. [Q1PEY8-2]
DR AlphaFoldDB; Q1PEY8; -.
DR BioGRID; 2891; 2.
DR IntAct; Q1PEY8; 1.
DR PaxDb; Q1PEY8; -.
DR PRIDE; Q1PEY8; -.
DR EnsemblPlants; AT2G29910.1; AT2G29910.1; AT2G29910. [Q1PEY8-1]
DR EnsemblPlants; AT2G29910.2; AT2G29910.2; AT2G29910. [Q1PEY8-2]
DR EnsemblPlants; AT2G29910.3; AT2G29910.3; AT2G29910. [Q1PEY8-2]
DR EnsemblPlants; AT2G29910.4; AT2G29910.4; AT2G29910. [Q1PEY8-1]
DR EnsemblPlants; AT2G29910.5; AT2G29910.5; AT2G29910. [Q1PEY8-1]
DR EnsemblPlants; AT2G29910.7; AT2G29910.7; AT2G29910. [Q1PEY8-1]
DR GeneID; 817541; -.
DR Gramene; AT2G29910.1; AT2G29910.1; AT2G29910. [Q1PEY8-1]
DR Gramene; AT2G29910.2; AT2G29910.2; AT2G29910. [Q1PEY8-2]
DR Gramene; AT2G29910.3; AT2G29910.3; AT2G29910. [Q1PEY8-2]
DR Gramene; AT2G29910.4; AT2G29910.4; AT2G29910. [Q1PEY8-1]
DR Gramene; AT2G29910.5; AT2G29910.5; AT2G29910. [Q1PEY8-1]
DR Gramene; AT2G29910.7; AT2G29910.7; AT2G29910. [Q1PEY8-1]
DR KEGG; ath:AT2G29910; -.
DR Araport; AT2G29910; -.
DR TAIR; locus:2052085; AT2G29910.
DR HOGENOM; CLU_010721_7_2_1; -.
DR InParanoid; Q1PEY8; -.
DR OMA; KRICAHR; -.
DR PhylomeDB; Q1PEY8; -.
DR PRO; PR:Q1PEY8; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q1PEY8; baseline and differential.
DR InterPro; IPR036047; F-box-like_dom_sf.
DR InterPro; IPR001810; F-box_dom.
DR InterPro; IPR013101; Leu-rich_rpt_2.
DR Pfam; PF00646; F-box; 1.
DR Pfam; PF07723; LRR_2; 1.
DR SUPFAM; SSF81383; SSF81383; 1.
DR PROSITE; PS50181; FBOX; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Leucine-rich repeat; Reference proteome; Repeat.
FT CHAIN 1..352
FT /note="F-box/LRR-repeat protein At2g29910"
FT /id="PRO_0000281936"
FT DOMAIN 4..50
FT /note="F-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00080"
FT REPEAT 101..124
FT /note="LRR 1"
FT REPEAT 149..173
FT /note="LRR 2"
FT REPEAT 175..199
FT /note="LRR 3"
FT REPEAT 298..323
FT /note="LRR 4"
FT VAR_SEQ 314..352
FT /note="FYFCCKSMPVFHNLLTLSFESAKKEAGQCCHFSSISLLT -> SFPYLLLFQ
FT FEVHSSLQSLLIV (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:16244158"
FT /id="VSP_024103"
FT CONFLICT 62
FT /note="F -> L (in Ref. 3; AAO11672/AAO11673)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 352 AA; 39502 MW; 7527B6D088659ED5 CRC64;
MGSRDLISSL PDEILGKVLS LLPTKRAAST AVLSKRWNNL PALVDKLDIN DAIGGPGGFP
EFIDKTLALL TNSTTIKRTS LNNEFQYGES QVNTWIRSFL ERGCLQLYLN AQSLYTIDTE
FFTSNTLVEL TITGGFSPDG LLPPGGVFFP KLKTLSLVLM TFVDSDMYEL FISGCPLLEE
FLLRNDEIEI PPVWNALVSS PSIKRLTIVH HFPNYREAHD GCWFRTPNLV YLDYSSYVPD
WYEVDLGSLV EARLDLRSWE RLRDEKAGGY GDCDSVYDDE EYPDDPILGD VTNLVTGLSN
IKTLHLSPDS LEVFYFCCKS MPVFHNLLTL SFESAKKEAG QCCHFSSISL LT
