FDL16_ARATH
ID FDL16_ARATH Reviewed; 442 AA.
AC Q8H1M0; O80993; Q3EBT9;
DT 03-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT 03-APR-2007, sequence version 2.
DT 25-MAY-2022, entry version 106.
DE RecName: Full=F-box/FBD/LRR-repeat protein At2g26030;
GN OrderedLocusNames=At2g26030; ORFNames=T19L18.16;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=16244158; DOI=10.1104/pp.105.063479;
RA Xiao Y.-L., Smith S.R., Ishmael N., Redman J.C., Kumar N., Monaghan E.L.,
RA Ayele M., Haas B.J., Wu H.C., Town C.D.;
RT "Analysis of the cDNAs of hypothetical genes on Arabidopsis chromosome 2
RT reveals numerous transcript variants.";
RL Plant Physiol. 139:1323-1337(2005).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Underwood B.A., Xiao Y.-L., Moskal W.A. Jr., Monaghan E.L., Wang W.,
RA Redman J.C., Wu H.C., Utterback T., Town C.D.;
RL Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences.;
CC Name=1;
CC IsoId=Q8H1M0-1; Sequence=Displayed;
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DR EMBL; AC004747; AAC31233.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC07786.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC07787.1; -; Genomic_DNA.
DR EMBL; AY144457; AAN52167.1; -; mRNA.
DR EMBL; AY649316; AAT69233.1; -; mRNA.
DR EMBL; AK176562; BAD44325.1; -; mRNA.
DR PIR; T02620; T02620.
DR RefSeq; NP_001031420.1; NM_001036343.1. [Q8H1M0-1]
DR RefSeq; NP_180173.1; NM_128162.3. [Q8H1M0-1]
DR AlphaFoldDB; Q8H1M0; -.
DR BioGRID; 2496; 1.
DR IntAct; Q8H1M0; 1.
DR PaxDb; Q8H1M0; -.
DR PRIDE; Q8H1M0; -.
DR EnsemblPlants; AT2G26030.1; AT2G26030.1; AT2G26030. [Q8H1M0-1]
DR EnsemblPlants; AT2G26030.3; AT2G26030.3; AT2G26030. [Q8H1M0-1]
DR GeneID; 817144; -.
DR Gramene; AT2G26030.1; AT2G26030.1; AT2G26030. [Q8H1M0-1]
DR Gramene; AT2G26030.3; AT2G26030.3; AT2G26030. [Q8H1M0-1]
DR KEGG; ath:AT2G26030; -.
DR Araport; AT2G26030; -.
DR TAIR; locus:2057422; AT2G26030.
DR eggNOG; ENOG502RYTW; Eukaryota.
DR HOGENOM; CLU_010721_1_3_1; -.
DR InParanoid; Q8H1M0; -.
DR PhylomeDB; Q8H1M0; -.
DR PRO; PR:Q8H1M0; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q8H1M0; baseline and differential.
DR Gene3D; 3.80.10.10; -; 1.
DR InterPro; IPR036047; F-box-like_dom_sf.
DR InterPro; IPR001810; F-box_dom.
DR InterPro; IPR006566; FBD.
DR InterPro; IPR013101; Leu-rich_rpt_2.
DR InterPro; IPR032675; LRR_dom_sf.
DR Pfam; PF00646; F-box; 1.
DR Pfam; PF08387; FBD; 1.
DR Pfam; PF07723; LRR_2; 1.
DR SMART; SM00579; FBD; 1.
DR SMART; SM00256; FBOX; 1.
DR SUPFAM; SSF81383; SSF81383; 1.
DR PROSITE; PS50181; FBOX; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Leucine-rich repeat; Reference proteome; Repeat.
FT CHAIN 1..442
FT /note="F-box/FBD/LRR-repeat protein At2g26030"
FT /id="PRO_0000283109"
FT DOMAIN 3..49
FT /note="F-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00080"
FT REPEAT 128..160
FT /note="LRR 1"
FT REPEAT 162..187
FT /note="LRR 2"
FT REPEAT 188..214
FT /note="LRR 3"
FT REPEAT 234..260
FT /note="LRR 4"
FT REPEAT 278..309
FT /note="LRR 5"
FT REPEAT 324..352
FT /note="LRR 6"
FT DOMAIN 358..410
FT /note="FBD"
SQ SEQUENCE 442 AA; 51454 MW; C0AB354B48173414 CRC64;
MNCDRICELP DSLLTQVLSY LPTIDSVKTS VLSKRWEFLW LRVPVLDLKV SDFPDENYAS
FIDNFLEFNR KSRMRKFKLK YDEYTYDDDR LAGWVVTTVD RGIQHLDAKG FETNMCVREF
MPQNIYKCNT LVSLMLVTVG IENPEFVVSL PSLKIMHLED VWYYDDPLIM EKIISGCPVL
EDFVLIRPID FCNLDVLQFL RVRSLSLRSF RLTFEYSVSC TYFSVEIDAP RLEYLNFNDD
QSDTIVVKNM TSLSMIDIDS EFNVKFGGSR LEPGDLRKRD IIRDFLTAIS CVRHMIISRR
TLEVLDRYSK LVPIPKFDNL YRLQAAVSRS MLQLLLVFLE SCPNLENLIL DFTVSTEPEQ
DGLTYVPQCL LSSLECVEIR ELIMGEETGE KLVRYFLKNS VVLKKLILRL EDSSIANQDS
DIFKELSTFT KRSRSCEVII IH
