FDL23_ARATH
ID FDL23_ARATH Reviewed; 453 AA.
AC Q8LF09; O81317;
DT 03-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT 31-MAY-2011, sequence version 2.
DT 03-AUG-2022, entry version 104.
DE RecName: Full=F-box/FBD/LRR-repeat protein At4g00160;
GN OrderedLocusNames=At4g00160; ORFNames=F6N15.5;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAC19303.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=AAM61661.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=CAB80774.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AF069299; AAC19303.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AL161471; CAB80774.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002687; AEE81830.1; -; Genomic_DNA.
DR EMBL; AY085107; AAM61661.1; ALT_INIT; mRNA.
DR PIR; T01344; T01344.
DR RefSeq; NP_567152.1; NM_116233.2.
DR AlphaFoldDB; Q8LF09; -.
DR PaxDb; Q8LF09; -.
DR PRIDE; Q8LF09; -.
DR EnsemblPlants; AT4G00160.1; AT4G00160.1; AT4G00160.
DR GeneID; 828180; -.
DR Gramene; AT4G00160.1; AT4G00160.1; AT4G00160.
DR KEGG; ath:AT4G00160; -.
DR Araport; AT4G00160; -.
DR TAIR; locus:2126911; AT4G00160.
DR HOGENOM; CLU_010721_1_2_1; -.
DR InParanoid; Q8LF09; -.
DR OMA; IQLIRAP; -.
DR OrthoDB; 686125at2759; -.
DR PRO; PR:Q8LF09; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q8LF09; baseline and differential.
DR Genevisible; Q8LF09; AT.
DR Gene3D; 3.80.10.10; -; 1.
DR InterPro; IPR036047; F-box-like_dom_sf.
DR InterPro; IPR001810; F-box_dom.
DR InterPro; IPR006566; FBD.
DR InterPro; IPR013101; Leu-rich_rpt_2.
DR InterPro; IPR032675; LRR_dom_sf.
DR Pfam; PF00646; F-box; 1.
DR Pfam; PF08387; FBD; 1.
DR Pfam; PF07723; LRR_2; 1.
DR SMART; SM00579; FBD; 1.
DR SUPFAM; SSF81383; SSF81383; 1.
DR PROSITE; PS50181; FBOX; 1.
PE 2: Evidence at transcript level;
KW Leucine-rich repeat; Reference proteome; Repeat.
FT CHAIN 1..453
FT /note="F-box/FBD/LRR-repeat protein At4g00160"
FT /id="PRO_0000283116"
FT DOMAIN 15..68
FT /note="F-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00080"
FT REPEAT 89..111
FT /note="LRR 1"
FT REPEAT 165..190
FT /note="LRR 2"
FT REPEAT 215..239
FT /note="LRR 3"
FT REPEAT 247..270
FT /note="LRR 4"
FT REPEAT 282..307
FT /note="LRR 5"
FT REPEAT 331..358
FT /note="LRR 6"
FT DOMAIN 355..406
FT /note="FBD"
SQ SEQUENCE 453 AA; 52063 MW; 23B18E3E7F985EE3 CRC64;
MEQGESLRIR VVMGKDRISE LPDALLIKIL SFLPTKIVVA TSVFSKQWRP LWKLVPNLEF
DSEDYDDKEQ YTFSEIVCKS FLSHKAPVLE SFRLEFESEK VDPVDIGLWV GIAFSRHLRE
LVLVAADTGT GTAFKFPSSL CTCNTLETLR LVLLILVDIS SPVVMKSLRT LHLELVSYKD
ESSIRNLLSG CPILEELLVI RGEDSDIEVF TIDEVPSLKR LTINDDHDGQ EFWGYVINAP
SLKYLLIEDL RCPGFCLNAP ELMEANIFDG TSITNDNFLG YLTSVKRLLL NLSPWKITYP
TGSIFYQLVS LEMYTREIDW WDLLTLMLEH SPKLQVLKLT DNCVKFHKNG LPGGKWNEPK
YVPECLLSHL ETFVWRRFDW GREEEKEIAT YILKNARRLN KATFSTNPVN SEELDKLKER
RKVHNELDGV VRASNSCQFV FKFDTSYHVS DSS
