FDL29_ARATH
ID FDL29_ARATH Reviewed; 481 AA.
AC Q93ZK9;
DT 03-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT 01-DEC-2001, sequence version 1.
DT 03-AUG-2022, entry version 103.
DE RecName: Full=F-box/FBD/LRR-repeat protein At5g18770;
GN OrderedLocusNames=At5g18770; ORFNames=F17K4.20;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
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DR EMBL; AC051627; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AC068655; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002688; AED92609.1; -; Genomic_DNA.
DR EMBL; AY056813; AAL10504.1; -; mRNA.
DR EMBL; AY133529; AAM91359.1; -; mRNA.
DR RefSeq; NP_197378.1; NM_121882.4.
DR AlphaFoldDB; Q93ZK9; -.
DR PaxDb; Q93ZK9; -.
DR PRIDE; Q93ZK9; -.
DR ProteomicsDB; 230612; -.
DR EnsemblPlants; AT5G18770.1; AT5G18770.1; AT5G18770.
DR GeneID; 831995; -.
DR Gramene; AT5G18770.1; AT5G18770.1; AT5G18770.
DR KEGG; ath:AT5G18770; -.
DR Araport; AT5G18770; -.
DR TAIR; locus:2144895; AT5G18770.
DR HOGENOM; CLU_010721_1_3_1; -.
DR InParanoid; Q93ZK9; -.
DR OMA; EMESPIT; -.
DR OrthoDB; 686125at2759; -.
DR PhylomeDB; Q93ZK9; -.
DR PRO; PR:Q93ZK9; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q93ZK9; baseline and differential.
DR Genevisible; Q93ZK9; AT.
DR GO; GO:0009507; C:chloroplast; HDA:TAIR.
DR InterPro; IPR036047; F-box-like_dom_sf.
DR InterPro; IPR001810; F-box_dom.
DR InterPro; IPR006566; FBD.
DR InterPro; IPR013101; Leu-rich_rpt_2.
DR Pfam; PF00646; F-box; 1.
DR Pfam; PF08387; FBD; 1.
DR Pfam; PF07723; LRR_2; 1.
DR SMART; SM00579; FBD; 1.
DR SUPFAM; SSF81383; SSF81383; 1.
PE 2: Evidence at transcript level;
KW Leucine-rich repeat; Reference proteome; Repeat.
FT CHAIN 1..481
FT /note="F-box/FBD/LRR-repeat protein At5g18770"
FT /id="PRO_0000283121"
FT DOMAIN 23..69
FT /note="F-box"
FT REPEAT 126..153
FT /note="LRR 1"
FT REPEAT 159..185
FT /note="LRR 2"
FT REPEAT 186..211
FT /note="LRR 3"
FT REPEAT 214..234
FT /note="LRR 4"
FT REPEAT 236..261
FT /note="LRR 5"
FT REPEAT 289..314
FT /note="LRR 6"
FT REPEAT 340..368
FT /note="LRR 7"
FT DOMAIN 378..430
FT /note="FBD"
SQ SEQUENCE 481 AA; 55718 MW; 39691CAAD8D68704 CRC64;
MVNLMRKFAK SIGRPGTEFW RGEDMISALP DHLLCHILIF LSTDESVLTS VLSSRWRNLW
KWVPRLDLNT SDFPYPNDVT CAAFIDKFLN LYNESYLREF KLRIDQANFR SNVSLYEPCL
GVVIKKPNVR HFQVESDLLE HWCTSEIRLT LSACQALVCL KLHLVWLNDF ESLSLPCLKI
MYLEDVVFPS DAAAETLISC SPVLEDLKLS LHRDDVVVVL RVYSQSLKSF TLKRAVPVYA
INGAHTVLVD TPRLVYMSLI DYQFKSFKII SMSDYVKVDL DVDFELMRDE LSERNIVYDL
LNNFSGVRNM TISWTTLKFI HRFHDMNPLP KFRDLTRLRA TMSSDASLEV LRIVLESCPK
LKHFHFTLEL VNDFPEAVIT GFSRVLPRCL VFSLESVEME SPITEKATEL KLVRYFLENS
ATLKKLVLLL NHESTGEKHE PGVLKQLIES PRRSSLCQFE VLAVPPNPEP WWIYVKPQRF
L
