FDL2_ARATH
ID FDL2_ARATH Reviewed; 456 AA.
AC Q56XS8; Q9LMH7;
DT 03-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT 10-MAY-2005, sequence version 1.
DT 25-MAY-2022, entry version 89.
DE RecName: Full=F-box/FBD/LRR-repeat protein At1g13780;
GN OrderedLocusNames=At1g13780; ORFNames=F16A14.1;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 6-456.
RC STRAIN=cv. Columbia;
RA Shinn P., Chen H., Cheuk R.F., Kim C.J., Carninci P., Hayashizaki Y.,
RA Ishida J., Kamiya A., Kawai J., Narusaka M., Sakurai T., Satou M., Seki M.,
RA Shinozaki K., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (APR-2004) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF79391.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC068197; AAF79391.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE29068.1; -; Genomic_DNA.
DR EMBL; BT012566; AAS99710.1; -; mRNA.
DR EMBL; AK221595; BAD95126.1; -; mRNA.
DR RefSeq; NP_172833.2; NM_101246.6.
DR AlphaFoldDB; Q56XS8; -.
DR PaxDb; Q56XS8; -.
DR PRIDE; Q56XS8; -.
DR ProteomicsDB; 230410; -.
DR EnsemblPlants; AT1G13780.1; AT1G13780.1; AT1G13780.
DR GeneID; 837938; -.
DR Gramene; AT1G13780.1; AT1G13780.1; AT1G13780.
DR KEGG; ath:AT1G13780; -.
DR Araport; AT1G13780; -.
DR TAIR; locus:2014859; AT1G13780.
DR HOGENOM; CLU_010721_1_3_1; -.
DR InParanoid; Q56XS8; -.
DR OMA; PRCFVST; -.
DR OrthoDB; 686125at2759; -.
DR PhylomeDB; Q56XS8; -.
DR PRO; PR:Q56XS8; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q56XS8; baseline and differential.
DR Gene3D; 3.80.10.10; -; 1.
DR InterPro; IPR036047; F-box-like_dom_sf.
DR InterPro; IPR001810; F-box_dom.
DR InterPro; IPR006566; FBD.
DR InterPro; IPR013101; Leu-rich_rpt_2.
DR InterPro; IPR032675; LRR_dom_sf.
DR Pfam; PF00646; F-box; 1.
DR Pfam; PF08387; FBD; 1.
DR Pfam; PF07723; LRR_2; 1.
DR SMART; SM00579; FBD; 1.
DR SMART; SM00256; FBOX; 1.
DR SUPFAM; SSF81383; SSF81383; 1.
PE 2: Evidence at transcript level;
KW Leucine-rich repeat; Reference proteome; Repeat.
FT CHAIN 1..456
FT /note="F-box/FBD/LRR-repeat protein At1g13780"
FT /id="PRO_0000283095"
FT DOMAIN 9..55
FT /note="F-box"
FT REPEAT 197..220
FT /note="LRR 1"
FT REPEAT 243..266
FT /note="LRR 2"
FT REPEAT 302..325
FT /note="LRR 3"
FT REPEAT 355..379
FT /note="LRR 4"
FT DOMAIN 372..424
FT /note="FBD"
SQ SEQUENCE 456 AA; 52996 MW; 23993C87D9507A19 CRC64;
MESTVMPGFD RISELPESLI SQILLHLPTK ASVKTSVLST RWKNLWLNVP GLDLNCRDFP
FQNNNEKLLI DFIDRFLQFN NESRLQKFKV DYSRDKIIKF SDRIGDAISR GIRVLDVESN
TYYRDADDCI DYPCIEFMPL NLYSCKTLVS LKLSYSGLED PGFVYLPCLK FMHLREVRWD
SSGTMNLEKL VSGCPVLEEL IYLHDDKLVV TRVRSRSLKR FSIPFRHKLS LFRRVTQTFE
IDAPGLEYMS LKADHFDRIV VKNLTSLFMI DLDIKFIVGF GWMFDPEDLP KRNEIRDFLT
GISSVRHMVI SHNTVKALDL YSKVGLIPKF NNLSRVEAAF PSSLLQFLPA FLESFPNLKH
LILETECPVE VMEKFELVNV PRCFVSTLEH VEIKGLFDWG EQDMKIASYF LENSAVLKKL
ILSFMGCPQH YSESDIYEEL NKLTKRSPRC QIIIRC
