FDL38_ARATH
ID FDL38_ARATH Reviewed; 422 AA.
AC Q9FM89; Q93ZF9;
DT 03-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 112.
DE RecName: Full=F-box/FBD/LRR-repeat protein At5g56420;
GN OrderedLocusNames=At5g56420; ORFNames=MCD7.18;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9628582; DOI=10.1093/dnares/5.1.41;
RA Sato S., Kaneko T., Kotani H., Nakamura Y., Asamizu E., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. IV. Sequence
RT features of the regions of 1,456,315 bp covered by nineteen physically
RT assigned P1 and TAC clones.";
RL DNA Res. 5:41-54(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
CC -!- SEQUENCE CAUTION:
CC Sequence=AAL09802.1; Type=Frameshift; Evidence={ECO:0000305};
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DR EMBL; AB009049; BAB11270.1; -; Genomic_DNA.
DR EMBL; CP002688; AED96762.1; -; Genomic_DNA.
DR EMBL; CP002688; AED96763.1; -; Genomic_DNA.
DR EMBL; CP002688; ANM69456.1; -; Genomic_DNA.
DR EMBL; AY057563; AAL09802.1; ALT_FRAME; mRNA.
DR RefSeq; NP_001318810.1; NM_001345199.1.
DR RefSeq; NP_200453.1; NM_125025.3.
DR RefSeq; NP_974943.1; NM_203214.1.
DR AlphaFoldDB; Q9FM89; -.
DR BioGRID; 20987; 1.
DR PaxDb; Q9FM89; -.
DR PRIDE; Q9FM89; -.
DR ProteomicsDB; 230495; -.
DR EnsemblPlants; AT5G56420.1; AT5G56420.1; AT5G56420.
DR EnsemblPlants; AT5G56420.2; AT5G56420.2; AT5G56420.
DR EnsemblPlants; AT5G56420.3; AT5G56420.3; AT5G56420.
DR GeneID; 835743; -.
DR Gramene; AT5G56420.1; AT5G56420.1; AT5G56420.
DR Gramene; AT5G56420.2; AT5G56420.2; AT5G56420.
DR Gramene; AT5G56420.3; AT5G56420.3; AT5G56420.
DR KEGG; ath:AT5G56420; -.
DR Araport; AT5G56420; -.
DR TAIR; locus:2161053; AT5G56420.
DR eggNOG; ENOG502SMFI; Eukaryota.
DR HOGENOM; CLU_010721_1_2_1; -.
DR InParanoid; Q9FM89; -.
DR OMA; CYIENMP; -.
DR OrthoDB; 686125at2759; -.
DR PhylomeDB; Q9FM89; -.
DR PRO; PR:Q9FM89; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FM89; baseline and differential.
DR Gene3D; 3.80.10.10; -; 1.
DR InterPro; IPR036047; F-box-like_dom_sf.
DR InterPro; IPR001810; F-box_dom.
DR InterPro; IPR006566; FBD.
DR InterPro; IPR013101; Leu-rich_rpt_2.
DR InterPro; IPR032675; LRR_dom_sf.
DR Pfam; PF00646; F-box; 1.
DR Pfam; PF08387; FBD; 1.
DR Pfam; PF07723; LRR_2; 1.
DR SMART; SM00579; FBD; 1.
DR SMART; SM00256; FBOX; 1.
DR SUPFAM; SSF81383; SSF81383; 1.
DR PROSITE; PS50181; FBOX; 1.
PE 2: Evidence at transcript level;
KW Leucine-rich repeat; Reference proteome; Repeat.
FT CHAIN 1..422
FT /note="F-box/FBD/LRR-repeat protein At5g56420"
FT /id="PRO_0000283130"
FT DOMAIN 5..54
FT /note="F-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00080"
FT REPEAT 59..85
FT /note="LRR 1"
FT REPEAT 136..163
FT /note="LRR 2"
FT REPEAT 164..189
FT /note="LRR 3"
FT REPEAT 193..212
FT /note="LRR 4"
FT REPEAT 214..238
FT /note="LRR 5"
FT REPEAT 279..304
FT /note="LRR 6"
FT REPEAT 305..330
FT /note="LRR 7"
FT DOMAIN 342..391
FT /note="FBD"
SQ SEQUENCE 422 AA; 48148 MW; FE9CEF993891C569 CRC64;
MVSYRDRLSQ LPDDFLLQIL SWLPTKDVLV TSLLSKRWRF LWTLVPRLNY DLRLHDNTCP
RFSQFVDRSL LLHKAPTLES LNIKIGSICF TAEKDVGVWV RIGVDRFVRE LSVSYCSGEE
PIRLPKCLFT CSTLAVLKLE NITLEDASCY VCFQSLKTLH LLDVKYLDDQ SLPRIISSCS
SLEDLVVQRC PGDNVKVVTV TAPSLKTLSL HKSSQAFEGD DDGFLIDTPK LKRVDIEDYW
GGFCYIENMP EVVEANVDVI YKNTEKLLGS ITSVKRLALC LITSDAAYPA GTIFSQLVHL
ELCTCAPRWW DLLTRLIEDS PKLRVLKLRQ KHIRRAPSPR ASWKQPALPK CLLFHLETFK
WELYEGSQKQ KEVATFILKH AIRLKTAIIS PKPTSTLLEK HEMLKDLSSS PRGSSTCELL
FD
