FDL39_ARATH
ID FDL39_ARATH Reviewed; 439 AA.
AC Q9FJV1; Q45GE5;
DT 03-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 25-MAY-2022, entry version 103.
DE RecName: Full=F-box/FBD/LRR-repeat protein At5g56570;
GN OrderedLocusNames=At5g56570; ORFNames=MIK19.1;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9734815; DOI=10.1093/dnares/5.3.203;
RA Kotani H., Nakamura Y., Sato S., Asamizu E., Kaneko T., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. VI. Sequence
RT features of the regions of 1,367,185 bp covered by 19 physically assigned
RT P1 and TAC clones.";
RL DNA Res. 5:203-216(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 10-439.
RC STRAIN=cv. Columbia;
RA Xiao Y.-L., Underwood B.A., Moskal W.A. Jr., Redman J.C., Wang W.,
RA Monaghan E.L., Wu H.C., Utterback T., Town C.D.;
RT "Reconstruction of cDNA sequences for hypothetical genes in Arabidopsis
RT thaliana from 5' and 3' RACE products.";
RL Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 23-439.
RC STRAIN=cv. Columbia;
RX PubMed=17147637; DOI=10.1111/j.1467-7652.2006.00183.x;
RA Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.;
RT "Simultaneous high-throughput recombinational cloning of open reading
RT frames in closed and open configurations.";
RL Plant Biotechnol. J. 4:317-324(2006).
CC -!- SEQUENCE CAUTION:
CC Sequence=AAZ52787.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR EMBL; AB013392; BAB09874.1; -; Genomic_DNA.
DR EMBL; CP002688; AED96782.1; -; Genomic_DNA.
DR EMBL; DQ132757; AAZ52787.1; ALT_INIT; mRNA.
DR EMBL; DQ492242; ABF59171.1; -; mRNA.
DR RefSeq; NP_200468.1; NM_125040.2.
DR AlphaFoldDB; Q9FJV1; -.
DR SMR; Q9FJV1; -.
DR PaxDb; Q9FJV1; -.
DR PRIDE; Q9FJV1; -.
DR EnsemblPlants; AT5G56570.1; AT5G56570.1; AT5G56570.
DR GeneID; 835758; -.
DR Gramene; AT5G56570.1; AT5G56570.1; AT5G56570.
DR KEGG; ath:AT5G56570; -.
DR Araport; AT5G56570; -.
DR TAIR; locus:2164971; AT5G56570.
DR eggNOG; ENOG502STUZ; Eukaryota.
DR HOGENOM; CLU_010721_1_2_1; -.
DR InParanoid; Q9FJV1; -.
DR OrthoDB; 686125at2759; -.
DR PhylomeDB; Q9FJV1; -.
DR PRO; PR:Q9FJV1; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FJV1; baseline and differential.
DR Genevisible; Q9FJV1; AT.
DR Gene3D; 3.80.10.10; -; 1.
DR InterPro; IPR006566; FBD.
DR InterPro; IPR032675; LRR_dom_sf.
DR Pfam; PF08387; FBD; 1.
DR SMART; SM00579; FBD; 1.
PE 2: Evidence at transcript level;
KW Leucine-rich repeat; Reference proteome; Repeat.
FT CHAIN 1..439
FT /note="F-box/FBD/LRR-repeat protein At5g56570"
FT /id="PRO_0000283131"
FT DOMAIN 35..81
FT /note="F-box"
FT REPEAT 155..177
FT /note="LRR 1"
FT REPEAT 223..246
FT /note="LRR 2"
FT DOMAIN 361..411
FT /note="FBD"
SQ SEQUENCE 439 AA; 50457 MW; 9348168C4018339D CRC64;
MRKLFFFLCT HVPKQRAKFT RIMESCQKKQ KLETPTELSD MPDDLIFKIF SFLPFFKEDL
ATRFISEYGK GLWNPDPNAI FDDESLDMTC MSFVYGSLMS KDAQILDSLH LKLRKYYIAS
DINFLVQLGV NRSMRELRID FFGKTLELPC CLSTCTTLKV LVLDHLNIMS VPGWFRLPSV
ETLQLSSVTG GSNYVPSLIR LCSVHERLVV DQNRNKDLVN INVPTLRSLS IDNKRRGHVP
LGSFWINVPS LMFLNIKDTF QTIFESMPAM IKANIEVAHD QSQSVKFIES LTSTRHLCLC
SPTSENPYPN GTKFSNLVHL KLCTCSAGWQ NLLACMLNDA PNLRSLTLKL RQKSDVNPKK
VWEKPTVVPE CLSTRLEILK WRDYEGTEHE KDMVGYILAN ATFLQRATFS TKDRNQCDSR
FSELQSMERV SEICEFVFD