FDL44_ARATH
ID FDL44_ARATH Reviewed; 434 AA.
AC Q9LJF9; F4JEU5;
DT 03-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT 21-MAR-2012, sequence version 3.
DT 25-MAY-2022, entry version 105.
DE RecName: Full=F-box/FBD/LRR-repeat protein At3g26920;
GN OrderedLocusNames=At3g26920; ORFNames=MDJ14.26;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10907853; DOI=10.1093/dnares/7.3.217;
RA Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence
RT features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC
RT clones.";
RL DNA Res. 7:217-221(2000).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14993207; DOI=10.1101/gr.1515604;
RA Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M.,
RA Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., Caboche M.,
RA Weissenbach J., Salanoubat M.;
RT "Whole genome sequence comparisons and 'full-length' cDNA sequences: a
RT combined approach to evaluate and improve Arabidopsis genome annotation.";
RL Genome Res. 14:406-413(2004).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-191.
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences.;
CC Name=1;
CC IsoId=Q9LJF9-1; Sequence=Displayed;
CC -!- SEQUENCE CAUTION:
CC Sequence=AEE77240.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=AEE77240.1; Type=Frameshift;
CC Sequence=BAB01184.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAB01184.1; Type=Frameshift;
CC Sequence=BX823705; Type=Miscellaneous discrepancy; Note=Sequencing errors.; Evidence={ECO:0000305};
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DR EMBL; AP000602; BAB01184.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AB016889; BAB01184.1; JOINED; Genomic_DNA.
DR EMBL; CP002686; AEE77240.1; ALT_SEQ; Genomic_DNA.
DR EMBL; BX823705; -; NOT_ANNOTATED_CDS; mRNA.
DR EMBL; AU230845; -; NOT_ANNOTATED_CDS; mRNA.
DR EMBL; AU239528; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; NP_001327287.1; NM_001338840.1.
DR RefSeq; NP_189327.5; NM_113604.7.
DR AlphaFoldDB; Q9LJF9; -.
DR PaxDb; Q9LJF9; -.
DR PeptideAtlas; Q9LJF9; -.
DR PRIDE; Q9LJF9; -.
DR ProteomicsDB; 230568; -. [Q9LJF9-1]
DR EnsemblPlants; AT3G26920.1; AT3G26920.1; AT3G26920.
DR GeneID; 822308; -.
DR Gramene; AT3G26920.1; AT3G26920.1; AT3G26920.
DR KEGG; ath:AT3G26920; -.
DR Araport; AT3G26920; -.
DR InParanoid; Q9LJF9; -.
DR OrthoDB; 686125at2759; -.
DR PRO; PR:Q9LJF9; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LJF9; baseline and differential.
DR Gene3D; 3.80.10.10; -; 1.
DR InterPro; IPR036047; F-box-like_dom_sf.
DR InterPro; IPR001810; F-box_dom.
DR InterPro; IPR006566; FBD.
DR InterPro; IPR013101; Leu-rich_rpt_2.
DR InterPro; IPR032675; LRR_dom_sf.
DR Pfam; PF00646; F-box; 1.
DR Pfam; PF08387; FBD; 1.
DR Pfam; PF07723; LRR_2; 1.
DR SMART; SM00579; FBD; 1.
DR SUPFAM; SSF81383; SSF81383; 1.
DR PROSITE; PS50181; FBOX; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Leucine-rich repeat; Reference proteome; Repeat.
FT CHAIN 1..434
FT /note="F-box/FBD/LRR-repeat protein At3g26920"
FT /id="PRO_0000281947"
FT DOMAIN 16..65
FT /note="F-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00080"
FT REPEAT 69..95
FT /note="LRR 1"
FT REPEAT 100..125
FT /note="LRR 2"
FT REPEAT 145..172
FT /note="LRR 3"
FT REPEAT 173..198
FT /note="LRR 4"
FT REPEAT 219..244
FT /note="LRR 5"
FT REPEAT 265..290
FT /note="LRR 6"
FT REPEAT 315..341
FT /note="LRR 7"
FT DOMAIN 353..403
FT /note="FBD"
FT CONFLICT 67
FT /note="N -> Y (in Ref. 5; AU239528)"
FT /evidence="ECO:0000305"
FT CONFLICT 72
FT /note="F -> V (in Ref. 5; AU239528)"
FT /evidence="ECO:0000305"
FT CONFLICT 77
FT /note="S -> T (in Ref. 5; AU230845)"
FT /evidence="ECO:0000305"
FT CONFLICT 116
FT /note="R -> P (in Ref. 5; AU230845)"
FT /evidence="ECO:0000305"
FT CONFLICT 151
FT /note="C -> S (in Ref. 5; AU230845)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 434 AA; 50306 MW; 7804AF7BD9570201 CRC64;
MTMKRCKSCG QSLSNEDRIS QLPEALLLQI LSLLPTKEVV AVSVLAKRWR FLWKMVPSLE
FFYYFTNDLE RFSYNVSKCL FSHQAPFLQS LHLNMNFGCD PRIMDFEILI GIAFGRQLRK
LVLKVYSGDW FKFPTSLYNS ETLETLELYH CILIDVPFPV CLKSLRTLNL HEVEFVNDES
VVNLLAGCIS LENLVIHQTT DLNVKTFTIA VPSLQRLTVI VEYYEEFSVF VVNTPSLKYL
KIEGIIVDDR TCIIENTPEL VEASIIDVSF KVFESILGSL ASVQRLSLKV SLVEIFSLPP
ISNTFYHLTY LELSTYKPKW WNLLTLMLDT SPNLQVLKIF DFMTSQEQRP WEKWNEPKNV
PECLLLHLET FVWTCYEGKL ENEIELAKYI LRNARRLKKA TFSIIEINPD KRVEMVGELK
SVVRASNSCQ LVFI
