FER1_ORYSJ
ID FER1_ORYSJ Reviewed; 139 AA.
AC Q0J8M2; B7F4N2; O22382; P11051; Q40683; Q6ZJN6; Q8S9N2;
DT 10-JUL-2007, integrated into UniProtKB/Swiss-Prot.
DT 03-OCT-2006, sequence version 1.
DT 03-AUG-2022, entry version 99.
DE RecName: Full=Ferredoxin-1, chloroplastic;
DE AltName: Full=Anti-disease protein 1;
DE AltName: Full=Ferredoxin I;
DE Flags: Precursor;
GN Name=ADI1; OrderedLocusNames=Os08g0104600, LOC_Os08g01380;
GN ORFNames=OJ1300_E01.1, OsJ_024720;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Kinmaze; TISSUE=Leaf;
RA Ohmori K., Doyama N., Ida S.;
RT "Molecular cloning of a rice leaf ferredoxin cDNA.";
RL (er) Plant Gene Register PGR96-025(1996).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA].
RA Rihe P., Quanhong Y., Aisheng X., Xian L., Huiqin F.;
RL Submitted (JAN-2002) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [8]
RP PROTEIN SEQUENCE OF 44-139.
RC TISSUE=Leaf;
RX PubMed=2771933;
RA Kamo M., Kotani N., Tsugita A., He Y.-K., Nozu Y.;
RT "Amino acid sequences of ferredoxins from rice cultivars, japonica and
RT indica.";
RL Protein Seq. Data Anal. 2:289-293(1989).
CC -!- FUNCTION: Ferredoxins are iron-sulfur proteins that transfer electrons
CC in a wide variety of metabolic reactions.
CC -!- COFACTOR:
CC Name=[2Fe-2S] cluster; Xref=ChEBI:CHEBI:190135;
CC Note=Binds 1 [2Fe-2S] cluster.;
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast.
CC -!- SIMILARITY: Belongs to the 2Fe2S plant-type ferredoxin family.
CC {ECO:0000305}.
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DR EMBL; D30763; BAA06436.1; -; mRNA.
DR EMBL; AY072818; AAL77198.1; -; mRNA.
DR EMBL; AP003909; BAD08924.1; -; Genomic_DNA.
DR EMBL; AP008214; BAF22693.1; -; Genomic_DNA.
DR EMBL; AP014964; BAT03433.1; -; Genomic_DNA.
DR EMBL; CM000145; EAZ41237.1; -; Genomic_DNA.
DR EMBL; AK119206; BAG99579.1; -; mRNA.
DR EMBL; AK119709; BAG99760.1; -; mRNA.
DR EMBL; AK120393; BAG99993.1; -; mRNA.
DR RefSeq; XP_015650415.1; XM_015794929.1.
DR AlphaFoldDB; Q0J8M2; -.
DR SMR; Q0J8M2; -.
DR BioGRID; 813476; 1.
DR STRING; 4530.OS08T0104600-02; -.
DR PaxDb; Q0J8M2; -.
DR PRIDE; Q0J8M2; -.
DR EnsemblPlants; Os08t0104600-02; Os08t0104600-02; Os08g0104600.
DR GeneID; 4344439; -.
DR Gramene; Os08t0104600-02; Os08t0104600-02; Os08g0104600.
DR KEGG; osa:4344439; -.
DR eggNOG; ENOG502RXFZ; Eukaryota.
DR HOGENOM; CLU_082632_1_1_1; -.
DR InParanoid; Q0J8M2; -.
DR OMA; CAARMIS; -.
DR OrthoDB; 1557921at2759; -.
DR Proteomes; UP000000763; Chromosome 8.
DR Proteomes; UP000007752; Chromosome 8.
DR Proteomes; UP000059680; Chromosome 8.
DR ExpressionAtlas; Q0J8M2; baseline and differential.
DR Genevisible; Q0J8M2; OS.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0051537; F:2 iron, 2 sulfur cluster binding; IEA:UniProtKB-KW.
DR GO; GO:0009055; F:electron transfer activity; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd00207; fer2; 1.
DR Gene3D; 3.10.20.30; -; 1.
DR InterPro; IPR036010; 2Fe-2S_ferredoxin-like_sf.
DR InterPro; IPR001041; 2Fe-2S_ferredoxin-type.
DR InterPro; IPR006058; 2Fe2S_fd_BS.
DR InterPro; IPR012675; Beta-grasp_dom_sf.
DR InterPro; IPR010241; Fd_pln.
DR Pfam; PF00111; Fer2; 1.
DR SUPFAM; SSF54292; SSF54292; 1.
DR TIGRFAMs; TIGR02008; fdx_plant; 1.
DR PROSITE; PS00197; 2FE2S_FER_1; 1.
DR PROSITE; PS51085; 2FE2S_FER_2; 1.
PE 1: Evidence at protein level;
KW 2Fe-2S; Chloroplast; Direct protein sequencing; Electron transport; Iron;
KW Iron-sulfur; Metal-binding; Plastid; Reference proteome; Transit peptide;
KW Transport.
FT TRANSIT 1..43
FT /note="Chloroplast"
FT /evidence="ECO:0000269|PubMed:2771933"
FT CHAIN 44..139
FT /note="Ferredoxin-1, chloroplastic"
FT /id="PRO_0000008835"
FT DOMAIN 46..136
FT /note="2Fe-2S ferredoxin-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00465"
FT BINDING 82
FT /ligand="[2Fe-2S] cluster"
FT /ligand_id="ChEBI:CHEBI:190135"
FT BINDING 87
FT /ligand="[2Fe-2S] cluster"
FT /ligand_id="ChEBI:CHEBI:190135"
FT BINDING 90
FT /ligand="[2Fe-2S] cluster"
FT /ligand_id="ChEBI:CHEBI:190135"
FT BINDING 120
FT /ligand="[2Fe-2S] cluster"
FT /ligand_id="ChEBI:CHEBI:190135"
FT CONFLICT 28
FT /note="Missing (in Ref. 2; AAL77198)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 139 AA; 14951 MW; 301F47841265E93C CRC64;
MAATALSSQV RLPMSLRVAT APAPARVSVL PASNKLGDRL RMQATYNVKL ITPDGEVELQ
VPDDVYILDQ AEEEGIDLPY SCRAGSCSSC AGKVVSGEID QSDQSFLDDD QVAAGWVLTC
HAYPKSDVVI ETHKEDDLI
