FH13_ORYSJ
ID FH13_ORYSJ Reviewed; 774 AA.
AC Q0D519; A0A0P0X886; Q6ZIP3;
DT 26-FEB-2008, integrated into UniProtKB/Swiss-Prot.
DT 17-OCT-2006, sequence version 1.
DT 25-MAY-2022, entry version 84.
DE RecName: Full=Formin-like protein 13;
DE AltName: Full=OsFH13;
DE Flags: Precursor;
GN Name=FH13; OrderedLocusNames=Os07g0588200, LOC_Os07g39920;
GN ORFNames=OJ1047_C01.20, OSJNBb0005G07.114;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=15256004; DOI=10.1186/1471-2164-5-44;
RA Cvrckova F., Novotny M., Pickova D., Zarsky V.;
RT "Formin homology 2 domains occur in multiple contexts in angiosperms.";
RL BMC Genomics 5:44-44(2004).
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Single-pass membrane
CC protein {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the formin-like family. Class-I subfamily.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAC83260.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAD30930.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP003985; BAC83260.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP005149; BAD30930.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008213; BAF22054.1; -; Genomic_DNA.
DR EMBL; AP014963; BAT02412.1; -; Genomic_DNA.
DR EMBL; AK120511; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015644673.1; XM_015789187.1.
DR AlphaFoldDB; Q0D519; -.
DR SMR; Q0D519; -.
DR STRING; 4530.OS07T0588200-01; -.
DR PaxDb; Q0D519; -.
DR PRIDE; Q0D519; -.
DR EnsemblPlants; Os07t0588200-01; Os07t0588200-01; Os07g0588200.
DR GeneID; 4343760; -.
DR Gramene; Os07t0588200-01; Os07t0588200-01; Os07g0588200.
DR KEGG; osa:4343760; -.
DR eggNOG; KOG1922; Eukaryota.
DR HOGENOM; CLU_007699_0_1_1; -.
DR InParanoid; Q0D519; -.
DR OMA; IEWSPPP; -.
DR OrthoDB; 1204639at2759; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR ExpressionAtlas; Q0D519; baseline and differential.
DR Genevisible; Q0D519; OS.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0051015; F:actin filament binding; IEA:InterPro.
DR GO; GO:0045010; P:actin nucleation; IEA:InterPro.
DR Gene3D; 1.20.58.2220; -; 1.
DR InterPro; IPR015425; FH2_Formin.
DR InterPro; IPR042201; FH2_Formin_sf.
DR InterPro; IPR027643; Formin-like_plant.
DR PANTHER; PTHR23213; PTHR23213; 1.
DR Pfam; PF02181; FH2; 1.
DR SMART; SM00498; FH2; 1.
DR PROSITE; PS51444; FH2; 1.
PE 2: Evidence at transcript level;
KW Membrane; Reference proteome; Signal; Transmembrane; Transmembrane helix.
FT SIGNAL 1..22
FT /evidence="ECO:0000255"
FT CHAIN 23..774
FT /note="Formin-like protein 13"
FT /id="PRO_0000319003"
FT TRANSMEM 89..109
FT /note="Helical"
FT /evidence="ECO:0000255"
FT DOMAIN 326..749
FT /note="FH2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00774"
FT REGION 51..78
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 130..163
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 176..338
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 374..402
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 740..774
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 51..69
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 141..163
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 186..218
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 219..257
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 261..299
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 679
FT /note="N -> D (in Ref. 4; AK120511)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 774 AA; 83810 MW; 10848D5E08EFA29F CRC64;
MRRRVALSTA IALLVGAQLC VAAEVEVAGA GGGVVRRRSL HQPFFPIEWS PPPPMSGSEA
VPPPPPAAAA SATTGGGRST TTVMNTVAIA LSAGLVALAV ASYSCCLLLR RRRREEEDDG
DRAAKRAVGA AAAVAARVPS DVGSSSRQHR SPPPSSTASD AIYLDPLTTL VEVRQHEKSP
DLRPLPLLKQ PSPDLRPLPP LKRPESQPPP PPPSTPPLTT TGYSTDEEDQ ATYYTAPKTA
MSSFSRSTSQ HSTLEQTAMP PMAAPAPPQT NPPRPVRPPP PPPPPRQRLL RPLPAESPPP
AALANLELTG SPVKPAVEDR GGENSGAARP PKPPHLKPLH WDKLRAISGR TTVWDQVKNS
DTFRVDEEAM ESLFLNSGGG GAGSSDPAAR RGGSGKQERR LLDPKRLQNV AIMLKSLNVA
ADEVIGALVR GNPEDLGSEF YETLAKMAPT KEEELKLKGY SGDLSKIDPA ERFLKDVLGV
PFAFERVDAM LYRANFDNEV NYLRKSFGTL EAACEELRSS KLFLKLLDAV LKTGNRMNDG
TNRGEARAFK LDTLLKLADI KSTDGRTTLL HFVVKEIIRS EGFDSDQSAV NPGSGSKEQF
KRDGLKLLAG LSSELSNVKR AATLEMDTLS GNILRLEADL EKVKLVLQLK ETCSDQGASE
NFFQAMVVFL RRAEAEIKNM KTAEENALRL VKETTEYFHG DATKEEPHPL RIFVVVDEFL
LILDRVCRDV GRTPERVMMG SGKSFRVPAG TSLPPHRNEN RRVLSSSDED SSSS
