FLA16_ARATH
ID FLA16_ARATH Reviewed; 445 AA.
AC Q8RWC5; Q9SJ64;
DT 17-OCT-2006, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2002, sequence version 1.
DT 03-AUG-2022, entry version 97.
DE RecName: Full=Fasciclin-like arabinogalactan protein 16;
DE Flags: Precursor;
GN Name=FLA16; OrderedLocusNames=At2g35860; ORFNames=F11F19.23;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY ORGANIZATION, AND NOMENCLATURE.
RX PubMed=14645732; DOI=10.1104/pp.103.031237;
RA Johnson K.L., Jones B.J., Bacic A., Schultz C.J.;
RT "The fasciclin-like arabinogalactan proteins of Arabidopsis. A multigene
RT family of putative cell adhesion molecules.";
RL Plant Physiol. 133:1911-1925(2003).
CC -!- FUNCTION: May be a cell surface adhesion protein.
CC -!- SUBCELLULAR LOCATION: Secreted {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the fasciclin-like AGP family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAD21471.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC007017; AAD21471.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002685; AEC09172.1; -; Genomic_DNA.
DR EMBL; AY093189; AAM13188.1; -; mRNA.
DR EMBL; BT006590; AAP31934.1; -; mRNA.
DR PIR; H84773; H84773.
DR RefSeq; NP_850253.1; NM_179922.2.
DR AlphaFoldDB; Q8RWC5; -.
DR SMR; Q8RWC5; -.
DR BioGRID; 3503; 1.
DR STRING; 3702.AT2G35860.1; -.
DR PaxDb; Q8RWC5; -.
DR PRIDE; Q8RWC5; -.
DR ProteomicsDB; 228935; -.
DR EnsemblPlants; AT2G35860.1; AT2G35860.1; AT2G35860.
DR GeneID; 818159; -.
DR Gramene; AT2G35860.1; AT2G35860.1; AT2G35860.
DR KEGG; ath:AT2G35860; -.
DR Araport; AT2G35860; -.
DR TAIR; locus:2039270; AT2G35860.
DR eggNOG; KOG1437; Eukaryota.
DR HOGENOM; CLU_047484_0_0_1; -.
DR InParanoid; Q8RWC5; -.
DR OMA; SHIVPER; -.
DR OrthoDB; 984651at2759; -.
DR PhylomeDB; Q8RWC5; -.
DR PRO; PR:Q8RWC5; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q8RWC5; baseline and differential.
DR Genevisible; Q8RWC5; AT.
DR GO; GO:0031225; C:anchored component of membrane; IEA:UniProt.
DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell.
DR Gene3D; 2.30.180.10; -; 2.
DR InterPro; IPR036378; FAS1_dom_sf.
DR InterPro; IPR000782; FAS1_domain.
DR InterPro; IPR044654; FLA15/16/17/18.
DR PANTHER; PTHR32499; PTHR32499; 1.
DR Pfam; PF02469; Fasciclin; 2.
DR SMART; SM00554; FAS1; 2.
DR SUPFAM; SSF82153; SSF82153; 2.
DR PROSITE; PS50213; FAS1; 2.
PE 2: Evidence at transcript level;
KW Glycoprotein; Proteoglycan; Reference proteome; Repeat; Secreted; Signal.
FT SIGNAL 1..23
FT /evidence="ECO:0000255"
FT CHAIN 24..445
FT /note="Fasciclin-like arabinogalactan protein 16"
FT /id="PRO_0000253876"
FT DOMAIN 35..173
FT /note="FAS1 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00082"
FT DOMAIN 257..400
FT /note="FAS1 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00082"
FT CARBOHYD 72
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 279
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
SQ SEQUENCE 445 AA; 49100 MW; D1F4C58E3A7C057C CRC64;
MDSSYGATKF LLLLFLTTSI ATALPDNKPV PGQINSNSVL VALLDSHYTE LAELVEKALL
LQTLEEAVGK HNITIFAPRN DALERNLDPL FKSFLLEPRN LKSLQSLLMF HILPKRITSP
QWPSLSHHHR TLSNDHLHLT VDVNTLKVDS AEIIRPDDVI RPDGIIHGIE RLLIPRSVQE
DFNRRRSLRS ISAVIPEGAP EVDPRTHRLK KPSPAVPAGA PPVLPIYDAM SPGPSLAPAP
APGPGGPRGH FNGDAQVKDF IHTLLHYGGY NEMADILVNL TSLATEMGRL VSEGYVLTVL
APNDEAMAKL TTDQLSEPGA PEQIMYYHII PEYQTEESMY NAVRRFGKVK YDSLRFPHKV
LAQEADGSVK FGHGDGSAYL FDPDIYTDGR ISVQGIDGVL FPKEETPATE IKPAAPVVKK
VSKSRRGKLM EVACRMMGSR FIPCQ