ALBA2_ARCFU
ID ALBA2_ARCFU Reviewed; 89 AA.
AC O28323;
DT 09-SEP-2003, integrated into UniProtKB/Swiss-Prot.
DT 01-JAN-1998, sequence version 1.
DT 25-MAY-2022, entry version 120.
DE RecName: Full=DNA/RNA-binding protein Alba 2;
DE AltName: Full=Af1;
GN Name=albA2; OrderedLocusNames=AF_1956;
OS Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC
OS 100126 / VC-16).
OC Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae;
OC Archaeoglobus.
OX NCBI_TaxID=224325;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16;
RX PubMed=9389475; DOI=10.1038/37052;
RA Klenk H.-P., Clayton R.A., Tomb J.-F., White O., Nelson K.E., Ketchum K.A.,
RA Dodson R.J., Gwinn M.L., Hickey E.K., Peterson J.D., Richardson D.L.,
RA Kerlavage A.R., Graham D.E., Kyrpides N.C., Fleischmann R.D.,
RA Quackenbush J., Lee N.H., Sutton G.G., Gill S.R., Kirkness E.F.,
RA Dougherty B.A., McKenney K., Adams M.D., Loftus B.J., Peterson S.N.,
RA Reich C.I., McNeil L.K., Badger J.H., Glodek A., Zhou L., Overbeek R.,
RA Gocayne J.D., Weidman J.F., McDonald L.A., Utterback T.R., Cotton M.D.,
RA Spriggs T., Artiach P., Kaine B.P., Sykes S.M., Sadow P.W., D'Andrea K.P.,
RA Bowman C., Fujii C., Garland S.A., Mason T.M., Olsen G.J., Fraser C.M.,
RA Smith H.O., Woese C.R., Venter J.C.;
RT "The complete genome sequence of the hyperthermophilic, sulphate-reducing
RT archaeon Archaeoglobus fulgidus.";
RL Nature 390:364-370(1997).
RN [2]
RP X-RAY CRYSTALLOGRAPHY (2.65 ANGSTROMS), AND MUTAGENESIS OF ASN-10; LYS-11;
RP LEU-18 AND PHE-54.
RX PubMed=12730210; DOI=10.1074/jbc.m303666200;
RA Zhao K., Chai X., Marmorstein R.;
RT "Structure of a Sir2 substrate, Alba, reveals a mechanism for
RT deacetylation-induced enhancement of DNA binding.";
RL J. Biol. Chem. 278:26071-26077(2003).
CC -!- FUNCTION: Binds double-stranded DNA tightly but without sequence
CC specificity. It is distributed uniformly and abundantly on the
CC chromosome, suggesting a role in chromatin architecture. However, it
CC does not significantly compact DNA. Binds rRNA and mRNA in vivo. May
CC play a role in maintaining the structural and functional stability of
CC RNA, and, perhaps, ribosomes (By similarity). {ECO:0000250}.
CC -!- SUBUNIT: Homotetramer.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000305}. Chromosome
CC {ECO:0000305}.
CC -!- PTM: Acetylated. Deacetylation by the SIR2-homolog deacetylase may
CC regulate its activity (By similarity). {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the histone-like Alba family. {ECO:0000305}.
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DR EMBL; AE000782; AAB89299.1; -; Genomic_DNA.
DR PIR; C69494; C69494.
DR RefSeq; WP_010879448.1; NC_000917.1.
DR PDB; 1NFH; X-ray; 2.65 A; A/B=1-89.
DR PDB; 1NFJ; X-ray; 2.00 A; A=1-89.
DR PDBsum; 1NFH; -.
DR PDBsum; 1NFJ; -.
DR AlphaFoldDB; O28323; -.
DR SMR; O28323; -.
DR STRING; 224325.AF_1956; -.
DR EnsemblBacteria; AAB89299; AAB89299; AF_1956.
DR GeneID; 24795698; -.
DR KEGG; afu:AF_1956; -.
DR eggNOG; arCOG01753; Archaea.
DR HOGENOM; CLU_110989_1_0_2; -.
DR OMA; QFNEGAK; -.
DR OrthoDB; 111461at2157; -.
DR PhylomeDB; O28323; -.
DR EvolutionaryTrace; O28323; -.
DR Proteomes; UP000002199; Chromosome.
DR GO; GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0003690; F:double-stranded DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR Gene3D; 3.30.110.20; -; 1.
DR HAMAP; MF_01122; AlbA; 1.
DR InterPro; IPR036882; Alba-like_dom_sf.
DR InterPro; IPR013795; DNA/RNA-bd_Alba.
DR InterPro; IPR002775; DNA/RNA-bd_Alba-like.
DR Pfam; PF01918; Alba; 1.
DR PIRSF; PIRSF028732; Alba; 1.
DR SUPFAM; SSF82704; SSF82704; 1.
DR TIGRFAMs; TIGR00285; TIGR00285; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Acetylation; Chromosome; Cytoplasm; DNA-binding;
KW Reference proteome; RNA-binding.
FT CHAIN 1..89
FT /note="DNA/RNA-binding protein Alba 2"
FT /id="PRO_0000151697"
FT MOD_RES 11
FT /note="N6-acetyllysine"
FT /evidence="ECO:0000250"
FT MUTAGEN 10
FT /note="N->A: Slight decrease in ability to bind DNA."
FT /evidence="ECO:0000269|PubMed:12730210"
FT MUTAGEN 11
FT /note="K->R,Q,M: Less stable tetramers; decreased ability
FT to bind DNA."
FT /evidence="ECO:0000269|PubMed:12730210"
FT MUTAGEN 18
FT /note="L->R: Less stable tetramers; decreased ability to
FT bind DNA."
FT /evidence="ECO:0000269|PubMed:12730210"
FT MUTAGEN 54
FT /note="F->R: Less stable tetramers; decreased ability to
FT bind DNA."
FT /evidence="ECO:0000269|PubMed:12730210"
FT STRAND 4..7
FT /evidence="ECO:0007829|PDB:1NFJ"
FT HELIX 13..25
FT /evidence="ECO:0007829|PDB:1NFJ"
FT STRAND 29..36
FT /evidence="ECO:0007829|PDB:1NFJ"
FT HELIX 39..53
FT /evidence="ECO:0007829|PDB:1NFJ"
FT STRAND 59..69
FT /evidence="ECO:0007829|PDB:1NFJ"
FT STRAND 79..88
FT /evidence="ECO:0007829|PDB:1NFJ"
SQ SEQUENCE 89 AA; 9894 MW; 96071A4C48CB8ED7 CRC64;
MAEHVVYVGN KPVMNYVLAT LTQLNEGADE VVIKARGRAI SRAVDVAEIV RNRFMPGVKV
KEIKIDTEEL ESEQGRRSNV STIEIVLAK