FRIP1_ARATH
ID FRIP1_ARATH Reviewed; 355 AA.
AC Q8S8K9;
DT 28-MAR-2018, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2002, sequence version 1.
DT 25-MAY-2022, entry version 123.
DE RecName: Full=Protein FIP1 {ECO:0000305};
DE AltName: Full=FRIGIDA-interacting protein 1 {ECO:0000303|PubMed:19429606};
GN Name=FIP1 {ECO:0000303|PubMed:19429606};
GN OrderedLocusNames=At2g06005 {ECO:0000312|Araport:AT2G06005};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP INTERACTION WITH FRI, AND DISRUPTION PHENOTYPE.
RX PubMed=19429606; DOI=10.1104/pp.109.137448;
RA Geraldo N., Baeurle I., Kidou S., Hu X., Dean C.;
RT "FRIGIDA delays flowering in Arabidopsis via a cotranscriptional mechanism
RT involving direct interaction with the nuclear cap-binding complex.";
RL Plant Physiol. 150:1611-1618(2009).
CC -!- SUBUNIT: Interacts with FRI. {ECO:0000269|PubMed:19429606}.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000255}; Multi-pass membrane
CC protein {ECO:0000255}.
CC -!- DISRUPTION PHENOTYPE: No visible phenotype under normal growth
CC conditions. {ECO:0000269|PubMed:19429606}.
CC -!- SIMILARITY: Belongs to the TMEM192 family. {ECO:0000305}.
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DR EMBL; AC005970; AAM15099.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC05993.1; -; Genomic_DNA.
DR EMBL; AY086482; AAM63484.1; -; mRNA.
DR RefSeq; NP_565332.1; NM_126614.3.
DR AlphaFoldDB; Q8S8K9; -.
DR SMR; Q8S8K9; -.
DR IntAct; Q8S8K9; 1.
DR STRING; 3702.AT2G06005.1; -.
DR PaxDb; Q8S8K9; -.
DR ProteomicsDB; 228946; -.
DR EnsemblPlants; AT2G06005.1; AT2G06005.1; AT2G06005.
DR GeneID; 815154; -.
DR Gramene; AT2G06005.1; AT2G06005.1; AT2G06005.
DR KEGG; ath:AT2G06005; -.
DR Araport; AT2G06005; -.
DR TAIR; locus:505006239; AT2G06005.
DR eggNOG; ENOG502QT7U; Eukaryota.
DR OMA; PWIFESE; -.
DR OrthoDB; 932704at2759; -.
DR PhylomeDB; Q8S8K9; -.
DR PRO; PR:Q8S8K9; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q8S8K9; baseline and differential.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005770; C:late endosome; IBA:GO_Central.
DR GO; GO:0005765; C:lysosomal membrane; IBA:GO_Central.
DR InterPro; IPR029399; TMEM192.
DR PANTHER; PTHR31592; PTHR31592; 1.
DR Pfam; PF14802; TMEM192; 1.
PE 1: Evidence at protein level;
KW Coiled coil; Membrane; Reference proteome; Transmembrane;
KW Transmembrane helix.
FT CHAIN 1..355
FT /note="Protein FIP1"
FT /id="PRO_0000443508"
FT TRANSMEM 42..62
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 72..92
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 113..133
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 149..169
FT /note="Helical"
FT /evidence="ECO:0000255"
FT REGION 331..355
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 220..337
FT /evidence="ECO:0000255"
SQ SEQUENCE 355 AA; 40586 MW; 92EE836EE3F67AA2 CRC64;
MSTERRASSN PMTNEENAMF LDILHEAPLF GHRKSRSLVG SYLYMLLLAG YAILAAGAPW
MFHRVQQLTP SLLCCCDVAL LVVTGVFQQY FVYQVQKIRL QGYYSFSQKL KHVVRLPFAI
AAYGTAAMLL VIVWRPQIHI LSISSLQRII MLVEAVGAGF FMGLYIGYVH QYNSVNSRPD
VLKSLYSPLQ PSSSMEGLRY YEGRLSDQQT ALLQYQRENL HFLSEEILCL QEKLSKYEQS
DDGSTPQVDL AHLLAARDQE LRTLSAEMNQ LQSELRLARS LIAERDAEVQ RVNSTNNQYI
EENERLRAIL SEWSMRAANL ERALEVERMS NSELQKEVAS TRRKQMLETT TSEQP