FRS11_ARATH
ID FRS11_ARATH Reviewed; 680 AA.
AC Q9SY66;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 25-MAY-2022, entry version 99.
DE RecName: Full=Protein FAR1-RELATED SEQUENCE 11;
GN Name=FRS11; OrderedLocusNames=At1g10240; ORFNames=F14N23.12;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP TISSUE SPECIFICITY, INDUCTION, SUBCELLULAR LOCATION, GENE FAMILY, AND
RP NOMENCLATURE.
RX PubMed=15591448; DOI=10.1104/pp.104.052191;
RA Lin R., Wang H.;
RT "Arabidopsis FHY3/FAR1 gene family and distinct roles of its members in
RT light control of Arabidopsis development.";
RL Plant Physiol. 136:4010-4022(2004).
CC -!- FUNCTION: Putative transcription activator involved in regulating light
CC control of development.
CC -!- INTERACTION:
CC Q9SY66; Q9STJ9: SAP10; NbExp=3; IntAct=EBI-4451817, EBI-15192063;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:15591448}. Note=The
CC nuclear localization is independent of the light treatment.
CC -!- TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline
CC leaves, inflorescences stems, flowers and siliques.
CC {ECO:0000269|PubMed:15591448}.
CC -!- INDUCTION: Up-regulated in hypocotyls by far-red light treatment.
CC {ECO:0000269|PubMed:15591448}.
CC -!- SIMILARITY: Belongs to the FHY3/FAR1 family. {ECO:0000305}.
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DR EMBL; AC005489; AAD32874.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE28558.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM59506.1; -; Genomic_DNA.
DR EMBL; AF424595; AAL11589.1; -; mRNA.
DR EMBL; BT000486; AAN18055.1; -; mRNA.
DR RefSeq; NP_001321860.1; NM_001331895.1.
DR RefSeq; NP_563865.1; NM_100898.3.
DR AlphaFoldDB; Q9SY66; -.
DR BioGRID; 22803; 9.
DR IntAct; Q9SY66; 9.
DR STRING; 3702.AT1G10240.1; -.
DR iPTMnet; Q9SY66; -.
DR PaxDb; Q9SY66; -.
DR PRIDE; Q9SY66; -.
DR ProteomicsDB; 228952; -.
DR EnsemblPlants; AT1G10240.1; AT1G10240.1; AT1G10240.
DR EnsemblPlants; AT1G10240.2; AT1G10240.2; AT1G10240.
DR GeneID; 837563; -.
DR Gramene; AT1G10240.1; AT1G10240.1; AT1G10240.
DR Gramene; AT1G10240.2; AT1G10240.2; AT1G10240.
DR KEGG; ath:AT1G10240; -.
DR Araport; AT1G10240; -.
DR TAIR; locus:2012828; AT1G10240.
DR eggNOG; ENOG502QQ3V; Eukaryota.
DR HOGENOM; CLU_008459_12_2_1; -.
DR InParanoid; Q9SY66; -.
DR OMA; EWKSEFY; -.
DR OrthoDB; 356233at2759; -.
DR PhylomeDB; Q9SY66; -.
DR PRO; PR:Q9SY66; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9SY66; baseline and differential.
DR Genevisible; Q9SY66; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR InterPro; IPR004330; FAR1_DNA_bnd_dom.
DR InterPro; IPR031052; FHY3/FAR1.
DR InterPro; IPR018289; MULE_transposase_dom.
DR InterPro; IPR006564; Znf_PMZ.
DR InterPro; IPR007527; Znf_SWIM.
DR PANTHER; PTHR31669; PTHR31669; 1.
DR Pfam; PF03101; FAR1; 1.
DR Pfam; PF10551; MULE; 1.
DR Pfam; PF04434; SWIM; 1.
DR SMART; SM00575; ZnF_PMZ; 1.
DR PROSITE; PS50966; ZF_SWIM; 1.
PE 1: Evidence at protein level;
KW Metal-binding; Nucleus; Reference proteome; Zinc; Zinc-finger.
FT CHAIN 1..680
FT /note="Protein FAR1-RELATED SEQUENCE 11"
FT /id="PRO_0000363489"
FT DOMAIN 62..156
FT /note="FAR1"
FT DOMAIN 277..373
FT /note="MULE"
FT ZN_FING 556..589
FT /note="SWIM-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00325"
FT REGION 1..36
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 21..36
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 680 AA; 77731 MW; 662B8F21145AFD4B CRC64;
MSDDPGQMLL IYDDPSDQRS LSLDDASSTE ESPDDNNLSL EAVHNAIPYL GQIFLTHDTA
YEFYSTFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPIKTLSE GKPQRNRRSS
RCGCQAYLRI SKLTELGSTE WRVTGFANHH NHELLEPNQV RFLPAYRSIS DADKSRILMF
SKTGISVQQM MRLLELEKCV EPGFLPFTEK DVRNLLQSFK KLDPEDENID FLRMCQSIKE
KDPNFKFEFT LDANDKLENI AWSYASSIQS YELFGDAVVF DTTHRLSAVE MPLGIWVGVN
NYGVPCFFGC VLLRDENLRS WSWALQAFTG FMNGKAPQTI LTDHNMCLKE AIAGEMPATK
HALCIWMVVG KFPSWFNAGL GERYNDWKAE FYRLYHLESV EEFELGWRDM VNSFGLHTNR
HINNLYASRS LWSLPYLRSH FLAGMTLTGR SKAINAFIQR FLSAQTRLAH FVEQVAVVVD
FKDQATEQQT MQQNLQNISL KTGAPMESHA ASVLTPFAFS KLQEQLVLAA HYASFQMDEG
YLVRHHTKLD GGRKVYWVPQ EGIISCSCQL FEFSGFLCRH ALRVLSTGNC FQVPDRYLPL
RWRRISTSFS KTFRSNAEDH GERVQLLQNL VSTLVSESAK SKERLDIATE QTSILLSRIR
EQPVSSLAIR DISSSVQRNF
