GAM1_ORYSI
ID GAM1_ORYSI Reviewed; 553 AA.
AC A2WW87; P93417; Q5VQR2; Q8SA38;
DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot.
DT 20-MAR-2007, sequence version 1.
DT 25-MAY-2022, entry version 82.
DE RecName: Full=Transcription factor GAMYB;
DE AltName: Full=OsGAMyb;
GN Name=GAM1; ORFNames=OsI_004080;
OS Oryza sativa subsp. indica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39946;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, AND INDUCTION.
RC STRAIN=cv. IR36; TISSUE=Aleurone, and Endosperm;
RX PubMed=9150608; DOI=10.1093/oxfordjournals.pcp.a029175;
RA Gubler F., Watts R.J., Kalla R., Matthews P., Keys M., Jacobsen J.V.;
RT "Cloning of a rice cDNA encoding a transcription factor homologous to
RT barley GAMyb.";
RL Plant Cell Physiol. 38:362-365(1997).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. 93-11;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
CC -!- FUNCTION: Transcriptional activator of gibberellin-dependent alpha-
CC amylase expression in aleurone cells. Involved in pollen and floral
CC organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase
CC promoter. {ECO:0000269|PubMed:9150608}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- INDUCTION: By gibberellin in aleurone cells.
CC {ECO:0000269|PubMed:9150608}.
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DR EMBL; X98355; CAA67000.1; -; mRNA.
DR EMBL; CM000126; EAY76233.1; -; Genomic_DNA.
DR PIR; T03762; T03762.
DR AlphaFoldDB; A2WW87; -.
DR SMR; A2WW87; -.
DR STRING; 39946.A2WW87; -.
DR EnsemblPlants; BGIOSGA004670-TA; BGIOSGA004670-PA; BGIOSGA004670.
DR Gramene; BGIOSGA004670-TA; BGIOSGA004670-PA; BGIOSGA004670.
DR HOGENOM; CLU_023548_1_1_1; -.
DR OMA; VWGLGSC; -.
DR Proteomes; UP000007015; Chromosome 1.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0048653; P:anther development; IEA:EnsemblPlants.
DR GO; GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.
DR GO; GO:0009555; P:pollen development; IEA:EnsemblPlants.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR CDD; cd00167; SANT; 2.
DR InterPro; IPR016310; GAMYB-like.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR001005; SANT/Myb.
DR Pfam; PF00249; Myb_DNA-binding; 2.
DR PIRSF; PIRSF001693; Transcription_factor_GAMYB; 1.
DR SMART; SM00717; SANT; 2.
DR SUPFAM; SSF46689; SSF46689; 1.
DR PROSITE; PS51294; HTH_MYB; 2.
PE 2: Evidence at transcript level;
KW Activator; Developmental protein; Differentiation; DNA-binding; Flowering;
KW Nucleus; Reference proteome; Repeat; Transcription;
KW Transcription regulation.
FT CHAIN 1..553
FT /note="Transcription factor GAMYB"
FT /id="PRO_0000300237"
FT DOMAIN 37..89
FT /note="HTH myb-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DOMAIN 90..144
FT /note="HTH myb-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DNA_BIND 65..89
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DNA_BIND 117..140
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT REGION 1..45
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 464..488
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 379
FT /note="V -> I (in Ref. 1; CAA67000)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 553 AA; 59961 MW; F448719F17DC7017 CRC64;
MYRVKSESDC EMIHQEQMDS PVADDGSSGG SPHRGGGPPL KKGPWTSAED AILVDYVKKH
GEGNWNAVQK NTGLFRCGKS CRLRWANHLR PNLKKGAFTA EEERLIIQLH SKMGNKWARM
AAHLPGRTDN EIKNYWNTRI KRCQRAGLPI YPTSVCNQSS NEDQQCSSDF DCGENLSNDL
LNANGLYLPD FTCDNFIANS EALPYAPHLS AVSISNLLGQ SFASKSCSFM DQVNQTGMLK
QSDGVLPGLS DTINGVISSV DQFSNDSEKL KQAVGFDYLH EANSTSKIIA PFGGALNGSH
AFLNGNFSAS RPTSGPLKME LPSLQDTESD PNSWLKYTVA PALQPTELVD PYLQSPAATP
SVKSECASPR NSGLLEELVH EAQTLRSGKN QQTSVISSSS SVGTPCNTTV LSPEFDMCQE
YWEEQHPGPF LNDCAPFSGN SFTESTPPVS AASPDIFQLS KVSPAQSTSM GSGEQVMGPK
YEPGDTSPHP ENFRPDALFS GNTADPSVFN NAIAMLLGND LSIDCRPVLG DGIMFNSSSW
SNMPHACEMS EFK
