GAT10_ARATH
ID GAT10_ARATH Reviewed; 308 AA.
AC Q8VZP4; Q9LN07;
DT 10-MAY-2005, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2002, sequence version 1.
DT 25-MAY-2022, entry version 122.
DE RecName: Full=GATA transcription factor 10;
GN Name=GATA10; OrderedLocusNames=At1g08000; ORFNames=T6D22.9;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY ORGANIZATION.
RX PubMed=15084732; DOI=10.1104/pp.103.037788;
RA Reyes J.C., Muro-Pastor M.I., Florencio F.J.;
RT "The GATA family of transcription factors in Arabidopsis and rice.";
RL Plant Physiol. 134:1718-1732(2004).
CC -!- FUNCTION: Transcriptional activator that specifically binds 5'-GATA-3'
CC or 5'-GAT-3' motifs within gene promoters. May be involved in the
CC regulation of some light-responsive genes (By similarity).
CC {ECO:0000250}.
CC -!- INTERACTION:
CC Q8VZP4; O82617: BBX23; NbExp=3; IntAct=EBI-15198801, EBI-15191793;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the type IV zinc-finger family. Class A
CC subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF79843.1; Type=Erroneous gene model prediction; Note=The predicted gene At1g08000 has been split into 2 genes: At1g08000 and At1g08010.; Evidence={ECO:0000305};
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DR EMBL; AC026875; AAF79843.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE28225.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE28226.1; -; Genomic_DNA.
DR EMBL; AY063953; AAL36309.1; -; mRNA.
DR EMBL; AY096723; AAM20357.1; -; mRNA.
DR RefSeq; NP_172278.1; NM_100674.3.
DR RefSeq; NP_973790.1; NM_202061.2.
DR AlphaFoldDB; Q8VZP4; -.
DR BioGRID; 22556; 5.
DR IntAct; Q8VZP4; 5.
DR STRING; 3702.AT1G08000.2; -.
DR PaxDb; Q8VZP4; -.
DR PRIDE; Q8VZP4; -.
DR ProteomicsDB; 247387; -.
DR EnsemblPlants; AT1G08000.1; AT1G08000.1; AT1G08000.
DR EnsemblPlants; AT1G08000.2; AT1G08000.2; AT1G08000.
DR GeneID; 837315; -.
DR Gramene; AT1G08000.1; AT1G08000.1; AT1G08000.
DR Gramene; AT1G08000.2; AT1G08000.2; AT1G08000.
DR KEGG; ath:AT1G08000; -.
DR Araport; AT1G08000; -.
DR TAIR; locus:2205090; AT1G08000.
DR eggNOG; KOG1601; Eukaryota.
DR HOGENOM; CLU_045755_2_1_1; -.
DR InParanoid; Q8VZP4; -.
DR OMA; IVRICTH; -.
DR OrthoDB; 1008475at2759; -.
DR PhylomeDB; Q8VZP4; -.
DR PRO; PR:Q8VZP4; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q8VZP4; baseline and differential.
DR Genevisible; Q8VZP4; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0030154; P:cell differentiation; IBA:GO_Central.
DR CDD; cd00202; ZnF_GATA; 1.
DR Gene3D; 3.30.50.10; -; 1.
DR InterPro; IPR000679; Znf_GATA.
DR InterPro; IPR013088; Znf_NHR/GATA.
DR Pfam; PF00320; GATA; 1.
DR SMART; SM00401; ZnF_GATA; 1.
DR PROSITE; PS00344; GATA_ZN_FINGER_1; 1.
DR PROSITE; PS50114; GATA_ZN_FINGER_2; 1.
PE 1: Evidence at protein level;
KW Activator; DNA-binding; Metal-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation; Zinc; Zinc-finger.
FT CHAIN 1..308
FT /note="GATA transcription factor 10"
FT /id="PRO_0000083434"
FT ZN_FING 214..268
FT /note="GATA-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00094"
SQ SEQUENCE 308 AA; 34290 MW; 25B3991021B46F43 CRC64;
MNWLPEAEAE EHLKGILSGD FFDGLTNHLD CPLEDIDSTN GEGDWVARFQ DLEPPPLDMF
PALPSDLTSC PKGAARVRIP NNMIPALKQS CSSEALSGIN STPHQSSAPP DIKVSYLFQS
LTPVSVLENS YGSLSTQNSG SQRLAFPVKG MRSKRRRPTT VRLSYLFPFE PRKSTPGESV
TEGYYSSEQH AKKKRKIHLI THTESSTLES SKSDGIVRIC THCETITTPQ WRQGPSGPKT
LCNACGVRFK SGRLVPEYRP ASSPTFIPSV HSNSHRKIIE MRKKDDEFDT SMIRSDIQKV
KQGRKKMV
