ID   GAT15_ORYSJ             Reviewed;         279 AA.
AC   Q6L5E5; Q9XHW4;
DT   15-FEB-2017, integrated into UniProtKB/Swiss-Prot.
DT   05-JUL-2004, sequence version 1.
DT   03-AUG-2022, entry version 133.
DE   RecName: Full=GATA transcription factor 15 {ECO:0000305};
DE            Short=OsGATA15 {ECO:0000303|PubMed:15084732};
DE   AltName: Full=Protein NECK LEAF 1 {ECO:0000303|PubMed:19337211};
GN   Name=GATA15 {ECO:0000303|PubMed:15084732};
GN   Synonyms=NL1 {ECO:0000303|PubMed:19337211};
GN   OrderedLocusNames=Os05g0578900 {ECO:0000312|EMBL:BAS95501.1},
GN   LOC_Os05g50270 {ECO:0000305};
GN   ORFNames=10A19I.2 {ECO:0000312|EMBL:AAD39588.1},
GN   OJ1126_B10.17 {ECO:0000312|EMBL:AAT39160.1},
GN   OsJ_19663 {ECO:0000312|EMBL:EEE64807.1},
GN   OSJNBa0017N18.4 {ECO:0000312|EMBL:AAU10691.1};
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, TISSUE SPECIFICITY, DEVELOPMENTAL
RP   STAGE, MUTAGENESIS OF ARG-182, AND DISRUPTION PHENOTYPE.
RC   STRAIN=cv. Zhonghua 11;
RX   PubMed=19337211; DOI=10.1038/cr.2009.36;
RA   Wang L., Yin H., Qian Q., Yang J., Huang C., Hu X., Luo D.;
RT   "NECK LEAF 1, a GATA type transcription factor, modulates organogenesis by
RT   regulating the expression of multiple regulatory genes during reproductive
RT   development in rice.";
RL   Cell Res. 19:598-611(2009).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA   Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA   Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F.,
RA   Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT   "A fine physical map of the rice chromosome 5.";
RL   Mol. Genet. Genomics 274:337-345(2005).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [5]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [7]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
RN   [8]
RP   GENE FAMILY, AND NOMENCLATURE.
RX   PubMed=15084732; DOI=10.1104/pp.103.037788;
RA   Reyes J.C., Muro-Pastor M.I., Florencio F.J.;
RT   "The GATA family of transcription factors in Arabidopsis and rice.";
RL   Plant Physiol. 134:1718-1732(2004).
CC   -!- FUNCTION: Probable transcription factor that regulates organogenesis
CC       during transition from the vegetative to the reproductive phase.
CC       Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during
CC       reproductive development in rice. May act upstream of CYP78A11/PLA1
CC       during panicle development. Acts independently of the photoperiodic and
CC       gibberellin signaling pathways. {ECO:0000269|PubMed:19337211}.
CC   -!- TISSUE SPECIFICITY: Highly expressed in inflorescences. Expressed in
CC       vascular bundles of root stele within the elongation zones, of
CC       elongating upper internodes and of the junctions of leaf blades and
CC       sheaths. {ECO:0000269|PubMed:19337211}.
CC   -!- DEVELOPMENTAL STAGE: Expressed predominantly in the bract primordia
CC       during panicle development. {ECO:0000269|PubMed:19337211}.
CC   -!- DISRUPTION PHENOTYPE: Reduced plant size. Delayed transition from
CC       vegetative to reproductive growth. Reduced panicle size with overgrown
CC       bracts at their bases. {ECO:0000269|PubMed:19337211}.
CC   -!- SIMILARITY: Belongs to the type IV zinc-finger family. Class B
CC       subfamily. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AAD39588.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR   EMBL; DQ784546; ABG77977.1; -; mRNA.
DR   EMBL; AC007858; AAD39588.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; AC098571; AAT39160.1; -; Genomic_DNA.
DR   EMBL; AC120988; AAU10691.1; -; Genomic_DNA.
DR   EMBL; AP008211; BAF18329.1; -; Genomic_DNA.
DR   EMBL; AP014961; BAS95501.1; -; Genomic_DNA.
DR   EMBL; CM000142; EEE64807.1; -; Genomic_DNA.
DR   EMBL; AK073464; BAG93465.1; -; mRNA.
DR   EMBL; AK101287; BAG94993.1; -; mRNA.
DR   RefSeq; XP_015638999.1; XM_015783513.1.
DR   AlphaFoldDB; Q6L5E5; -.
DR   SMR; Q6L5E5; -.
DR   STRING; 4530.OS05T0578900-01; -.
DR   PaxDb; Q6L5E5; -.
DR   PRIDE; Q6L5E5; -.
DR   EnsemblPlants; Os05t0578900-01; Os05t0578900-01; Os05g0578900.
DR   GeneID; 4339709; -.
DR   Gramene; Os05t0578900-01; Os05t0578900-01; Os05g0578900.
DR   KEGG; osa:4339709; -.
DR   eggNOG; KOG1601; Eukaryota.
DR   HOGENOM; CLU_062129_0_0_1; -.
DR   InParanoid; Q6L5E5; -.
DR   OMA; RRCCANC; -.
DR   OrthoDB; 1472671at2759; -.
DR   Proteomes; UP000000763; Chromosome 5.
DR   Proteomes; UP000007752; Chromosome 5.
DR   Proteomes; UP000059680; Chromosome 5.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0048437; P:floral organ development; IMP:UniProtKB.
DR   GO; GO:0048510; P:regulation of timing of transition from vegetative to reproductive phase; IMP:UniProtKB.
DR   CDD; cd00202; ZnF_GATA; 1.
DR   Gene3D; 3.30.50.10; -; 1.
DR   InterPro; IPR044272; GATA18/19/20.
DR   InterPro; IPR000679; Znf_GATA.
DR   InterPro; IPR013088; Znf_NHR/GATA.
DR   PANTHER; PTHR46813; PTHR46813; 1.
DR   Pfam; PF00320; GATA; 1.
DR   SMART; SM00401; ZnF_GATA; 1.
DR   PROSITE; PS00344; GATA_ZN_FINGER_1; 1.
DR   PROSITE; PS50114; GATA_ZN_FINGER_2; 1.
PE   1: Evidence at protein level;
KW   DNA-binding; Flowering; Metal-binding; Reference proteome; Transcription;
KW   Transcription regulation; Zinc; Zinc-finger.
FT   CHAIN           1..279
FT                   /note="GATA transcription factor 15"
FT                   /id="PRO_0000439005"
FT   ZN_FING         154..179
FT                   /note="GATA-type"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00094"
FT   REGION          52..94
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        52..84
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   MUTAGEN         182
FT                   /note="R->G: In nl1-2; reduced plant size. Delayed
FT                   transition from vegetative to reproductive growth. Reduced
FT                   panicle size with overgrown bracts at their bases."
FT                   /evidence="ECO:0000269|PubMed:19337211"
FT   CONFLICT        246
FT                   /note="D -> N (in Ref. 2; AAD39588)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        275
FT                   /note="L -> V (in Ref. 2; AAD39588)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   279 AA;  28292 MW;  D7F3EAFEB708FBE1 CRC64;
     MLHHYYSGGA GHHQDVAAAG SPGDMASSTF SLFFPMSNGQ CWPPSTVEES AAYDDHSTVT
     TSPSSPSSSS TGSVDCTLSL GTPSSRRAEP VAAAAPAANH GAPVPAHYPS LSAATVSWDA
     TAESYYCGQQ GRPATGAAKC AAGAGHDALL DRRCANCGTA STPLWRNGPR GPKSLCNACG
     IRYKKEERRA AATTTTADGA AGCGFITAQR GRGSTAAKAA PAVTTCGEET SPYVVGGGGG
     GGEVADAAYL AWRLNVVPPA ATATAFSVWP ERASLYHYN