GAT17_ARATH
ID GAT17_ARATH Reviewed; 190 AA.
AC Q9LIB5;
DT 10-MAY-2005, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 120.
DE RecName: Full=GATA transcription factor 17;
GN Name=GATA17; OrderedLocusNames=At3g16870; ORFNames=MUH15.3;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10907853; DOI=10.1093/dnares/7.3.217;
RA Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence
RT features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC
RT clones.";
RL DNA Res. 7:217-221(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Cheuk R.F., Chen H., Kim C.J., Shinn P., Ecker J.R.;
RT "Arabidopsis cDNA clones.";
RL Submitted (MAY-2004) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY ORGANIZATION.
RX PubMed=15084732; DOI=10.1104/pp.103.037788;
RA Reyes J.C., Muro-Pastor M.I., Florencio F.J.;
RT "The GATA family of transcription factors in Arabidopsis and rice.";
RL Plant Physiol. 134:1718-1732(2004).
CC -!- FUNCTION: Transcriptional regulator that specifically binds 5'-GATA-3'
CC or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the type IV zinc-finger family. Class B
CC subfamily. {ECO:0000305}.
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DR EMBL; AP001308; BAB03075.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE75878.1; -; Genomic_DNA.
DR EMBL; BT010844; AAR24211.1; -; mRNA.
DR EMBL; BT012611; AAT06430.1; -; mRNA.
DR RefSeq; NP_188312.1; NM_112563.3.
DR AlphaFoldDB; Q9LIB5; -.
DR BioGRID; 6275; 9.
DR IntAct; Q9LIB5; 9.
DR STRING; 3702.AT3G16870.1; -.
DR PaxDb; Q9LIB5; -.
DR PRIDE; Q9LIB5; -.
DR EnsemblPlants; AT3G16870.1; AT3G16870.1; AT3G16870.
DR GeneID; 820942; -.
DR Gramene; AT3G16870.1; AT3G16870.1; AT3G16870.
DR KEGG; ath:AT3G16870; -.
DR Araport; AT3G16870; -.
DR TAIR; locus:2093678; AT3G16870.
DR eggNOG; KOG1601; Eukaryota.
DR HOGENOM; CLU_060197_1_1_1; -.
DR InParanoid; Q9LIB5; -.
DR OMA; GMRSEEK; -.
DR OrthoDB; 1480372at2759; -.
DR PhylomeDB; Q9LIB5; -.
DR PRO; PR:Q9LIB5; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LIB5; baseline and differential.
DR Genevisible; Q9LIB5; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0030154; P:cell differentiation; IBA:GO_Central.
DR CDD; cd00202; ZnF_GATA; 1.
DR Gene3D; 3.30.50.10; -; 1.
DR InterPro; IPR000679; Znf_GATA.
DR InterPro; IPR013088; Znf_NHR/GATA.
DR Pfam; PF00320; GATA; 1.
DR SMART; SM00401; ZnF_GATA; 1.
DR PROSITE; PS00344; GATA_ZN_FINGER_1; 1.
DR PROSITE; PS50114; GATA_ZN_FINGER_2; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation; Zinc; Zinc-finger.
FT CHAIN 1..190
FT /note="GATA transcription factor 17"
FT /id="PRO_0000083446"
FT ZN_FING 38..92
FT /note="GATA-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00094"
FT REGION 1..42
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 77..101
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..18
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 20..42
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 79..101
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 190 AA; 20610 MW; C1499812E70B9351 CRC64;
MSEGSEDTKT KLDSAGELSD VDNENCSSSG SGGGSSSGDT KRTCVDCGTI RTPLWRGGPA
GPKSLCNACG IKSRKKRQAA LGMRSEEKKK NRKSNCNNDL NLDHRNAKKY KINIVDDGKI
DIDDDPKICN NKRSSSSSSN KGVSKFLDLG FKVPVMKRSA VEKKRLWRKL GEEERAAVLL
MALSCSSVYA
