GAT20_ARATH
ID GAT20_ARATH Reviewed; 208 AA.
AC Q9ZPX0; A1A6I5; C0SV48;
DT 10-MAY-2005, integrated into UniProtKB/Swiss-Prot.
DT 31-MAY-2011, sequence version 2.
DT 03-AUG-2022, entry version 131.
DE RecName: Full=GATA transcription factor 20 {ECO:0000312|EMBL:AAD15499.1};
DE AltName: Full=Protein HAN-LIKE 1 {ECO:0000303|PubMed:15367721};
GN Name=GATA20 {ECO:0000312|EMBL:AAD15499.1};
GN Synonyms=HANL1 {ECO:0000303|PubMed:15367721};
GN OrderedLocusNames=At2g18380 {ECO:0000312|Araport:AT2G18380};
GN ORFNames=T30D6.11 {ECO:0000312|EMBL:AAD15499.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 2-208.
RC STRAIN=cv. Columbia;
RA Bautista V.R., Kim C.J., Chen H., Quinitio C., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 2-208.
RA Fujita M., Mizukado S., Seki M., Shinozaki K., Mitsuda N., Takiguchi Y.,
RA Takagi M.;
RT "ORF cloning and analysis of Arabidopsis transcription factor genes.";
RL Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RC STRAIN=cv. Columbia, cv. Landsberg erecta, and cv. Wassilewskija;
RX PubMed=15367721; DOI=10.1105/tpc.104.024869;
RA Zhao Y., Medrano L., Ohashi K., Fletcher J.C., Yu H., Sakai H.,
RA Meyerowitz E.M.;
RT "HANABA TARANU is a GATA transcription factor that regulates shoot apical
RT meristem and flower development in Arabidopsis.";
RL Plant Cell 16:2586-2600(2004).
RN [6]
RP GENE FAMILY ORGANIZATION.
RX PubMed=15084732; DOI=10.1104/pp.103.037788;
RA Reyes J.C., Muro-Pastor M.I., Florencio F.J.;
RT "The GATA family of transcription factors in Arabidopsis and rice.";
RL Plant Physiol. 134:1718-1732(2004).
CC -!- FUNCTION: Transcriptional regulator that specifically binds 5'-GATA-3'
CC or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the type IV zinc-finger family. Class B
CC subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAD15499.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
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DR EMBL; AC006439; AAD15499.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002685; AEC06763.1; -; Genomic_DNA.
DR EMBL; BT029505; ABL66761.1; -; mRNA.
DR EMBL; AB493551; BAH30389.1; -; mRNA.
DR PIR; F84563; F84563.
DR RefSeq; NP_179429.2; NM_127395.3.
DR AlphaFoldDB; Q9ZPX0; -.
DR SMR; Q9ZPX0; -.
DR BioGRID; 1710; 9.
DR IntAct; Q9ZPX0; 4.
DR STRING; 3702.AT2G18380.1; -.
DR PaxDb; Q9ZPX0; -.
DR PRIDE; Q9ZPX0; -.
DR EnsemblPlants; AT2G18380.1; AT2G18380.1; AT2G18380.
DR GeneID; 816353; -.
DR Gramene; AT2G18380.1; AT2G18380.1; AT2G18380.
DR KEGG; ath:AT2G18380; -.
DR Araport; AT2G18380; -.
DR TAIR; locus:2062095; AT2G18380.
DR eggNOG; KOG1601; Eukaryota.
DR HOGENOM; CLU_062129_1_0_1; -.
DR InParanoid; Q9ZPX0; -.
DR OMA; PEMEYPY; -.
DR OrthoDB; 1472671at2759; -.
DR PRO; PR:Q9ZPX0; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9ZPX0; baseline and differential.
DR Genevisible; Q9ZPX0; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009908; P:flower development; IEA:InterPro.
DR CDD; cd00202; ZnF_GATA; 1.
DR Gene3D; 3.30.50.10; -; 1.
DR InterPro; IPR044272; GATA18/19/20.
DR InterPro; IPR000679; Znf_GATA.
DR InterPro; IPR013088; Znf_NHR/GATA.
DR PANTHER; PTHR46813; PTHR46813; 1.
DR Pfam; PF00320; GATA; 1.
DR SMART; SM00401; ZnF_GATA; 1.
DR PROSITE; PS00344; GATA_ZN_FINGER_1; 1.
DR PROSITE; PS50114; GATA_ZN_FINGER_2; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation; Zinc; Zinc-finger.
FT CHAIN 1..208
FT /note="GATA transcription factor 20"
FT /id="PRO_0000083444"
FT ZN_FING 94..119
FT /note="GATA-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00094"
SQ SEQUENCE 208 AA; 23027 MW; 65D737A32EC27C03 CRC64;
MMGYQTNSNF SMFFSSENDD QNHHNYDPYN NFSSSTSVDC TLSLGTPSTR LDDHHRFSSA
NSNNISGDFY IHGGNAKTSS YKKGGVAHSL PRRCASCDTT STPLWRNGPK GPKSLCNACG
IRFKKEERRA TARNLTISGG GSSAAEVPVE NSYNGGGNYY SHHHHHYASS SPSWAHQNTQ
RVPYFSPVPE MEYPYVDNVT ASSFMSWN
