GAT20_ORYSJ
ID GAT20_ORYSJ Reviewed; 340 AA.
AC Q5Z4U5; Q0D9U1;
DT 09-DEC-2015, integrated into UniProtKB/Swiss-Prot.
DT 23-NOV-2004, sequence version 1.
DT 03-AUG-2022, entry version 94.
DE RecName: Full=GATA transcription factor 20 {ECO:0000303|PubMed:15084732};
DE Short=OsGATA20 {ECO:0000303|PubMed:15084732};
DE AltName: Full=Protein TIFY 2b {ECO:0000305};
DE Short=OsTIFY2b {ECO:0000303|PubMed:19618278};
GN Name=GATA20 {ECO:0000303|PubMed:15084732};
GN Synonyms=TIFY2B {ECO:0000303|PubMed:19618278};
GN OrderedLocusNames=Os06g0698900 {ECO:0000312|EMBL:BAF20382.2},
GN LOC_Os06g48534;
GN ORFNames=P0468G03.1 {ECO:0000312|EMBL:BAD54672.1},
GN P0545E05.36 {ECO:0000312|EMBL:BAD54672.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 27-340.
RC STRAIN=cv. Nipponbare;
RG The rice full-length cDNA consortium;
RT "Oryza sativa full length cDNA.";
RL Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=15084732; DOI=10.1104/pp.103.037788;
RA Reyes J.C., Muro-Pastor M.I., Florencio F.J.;
RT "The GATA family of transcription factors in Arabidopsis and rice.";
RL Plant Physiol. 134:1718-1732(2004).
RN [6]
RP GENE FAMILY, NOMENCLATURE, AND INDUCTION.
RX PubMed=19618278; DOI=10.1007/s11103-009-9524-8;
RA Ye H., Du H., Tang N., Li X., Xiong L.;
RT "Identification and expression profiling analysis of TIFY family genes
RT involved in stress and phytohormone responses in rice.";
RL Plant Mol. Biol. 71:291-305(2009).
CC -!- FUNCTION: Transcriptional activator that specifically binds 5'-GATA-3'
CC or 5'-GAT-3' motifs within gene promoters.
CC {ECO:0000250|UniProtKB:Q8LAU9}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00357}.
CC -!- INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-
CC regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
CC -!- SIMILARITY: Belongs to the type IV zinc-finger family. Class C
CC subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF20382.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP004278; BAD53990.1; -; Genomic_DNA.
DR EMBL; AP005931; BAD54672.1; -; Genomic_DNA.
DR EMBL; AP008212; BAF20382.2; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014962; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AK243334; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015641381.1; XM_015785895.1.
DR AlphaFoldDB; Q5Z4U5; -.
DR SMR; Q5Z4U5; -.
DR STRING; 4530.OS06T0698900-01; -.
DR PaxDb; Q5Z4U5; -.
DR PRIDE; Q5Z4U5; -.
DR KEGG; osa:4341953; -.
DR eggNOG; KOG1601; Eukaryota.
DR HOGENOM; CLU_057264_0_0_1; -.
DR InParanoid; Q5Z4U5; -.
DR OrthoDB; 1089061at2759; -.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR CDD; cd00202; ZnF_GATA; 1.
DR Gene3D; 3.30.50.10; -; 1.
DR InterPro; IPR010402; CCT_domain.
DR InterPro; IPR045280; TIFY-like.
DR InterPro; IPR010399; Tify_dom.
DR InterPro; IPR000679; Znf_GATA.
DR InterPro; IPR013088; Znf_NHR/GATA.
DR PANTHER; PTHR46125; PTHR46125; 1.
DR Pfam; PF06203; CCT; 1.
DR Pfam; PF00320; GATA; 1.
DR Pfam; PF06200; tify; 1.
DR SMART; SM00979; TIFY; 1.
DR SMART; SM00401; ZnF_GATA; 1.
DR PROSITE; PS51017; CCT; 1.
DR PROSITE; PS00344; GATA_ZN_FINGER_1; 1.
DR PROSITE; PS50114; GATA_ZN_FINGER_2; 1.
DR PROSITE; PS51320; TIFY; 1.
PE 2: Evidence at transcript level;
KW Activator; DNA-binding; Metal-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation; Zinc; Zinc-finger.
FT CHAIN 1..340
FT /note="GATA transcription factor 20"
FT /id="PRO_0000434838"
FT DOMAIN 121..156
FT /note="Tify"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00650"
FT DOMAIN 182..224
FT /note="CCT"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00357"
FT ZN_FING 257..284
FT /note="GATA-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00094"
FT REGION 1..88
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 215..253
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 313..340
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 13..27
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 60..84
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 216..243
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 340 AA; 36514 MW; 0280C6DDBE0CECA1 CRC64;
MSHHDGSKPY QPRRGPERPP PPAPADDAAA HVAPTVDHLA AVAAEAEAMA RFEEEHRALG
AEEEYEEEED ELEEEEEEME EDEDAQHHEG VGGEVAVPMD AEAAAQLDPH GGMLAASGAV
QPMASNQLTL SFQGEVYVFD SVSPDKVQAV LLLLGGRELN PGLGSGASSS APYSKRLNFP
HRVASLMRFR EKRKERNFDK KIRYSVRKEV ALRMQRNRGQ FTSSKPKGDE ATSELTASDG
SPNWGSVEGR PPSAAECHHC GINAKATPMM RRGPDGPRTL CNACGLMWAN KGMLRDLSKA
PPTPIQVVAS VNDGNGSAAA PTTEQEIPAP ATVNGHESST
