GATA5_ARATH
ID GATA5_ARATH Reviewed; 339 AA.
AC Q9FH57;
DT 10-MAY-2005, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 125.
DE RecName: Full=GATA transcription factor 5;
GN Name=GATA5; OrderedLocusNames=At5g66320; ORFNames=K1L20.10;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10718197; DOI=10.1093/dnares/7.1.31;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence
RT features of the regions of 3,076,755 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:31-63(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY ORGANIZATION.
RX PubMed=15084732; DOI=10.1104/pp.103.037788;
RA Reyes J.C., Muro-Pastor M.I., Florencio F.J.;
RT "The GATA family of transcription factors in Arabidopsis and rice.";
RL Plant Physiol. 134:1718-1732(2004).
CC -!- FUNCTION: Transcriptional activator that specifically binds 5'-GATA-3'
CC or 5'-GAT-3' motifs within gene promoters. May be involved in the
CC regulation of some light-responsive genes (By similarity).
CC {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the type IV zinc-finger family. Class A
CC subfamily. {ECO:0000305}.
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DR EMBL; AB022211; BAB10711.1; -; Genomic_DNA.
DR EMBL; CP002688; AED98198.1; -; Genomic_DNA.
DR EMBL; CP002688; AED98199.1; -; Genomic_DNA.
DR EMBL; AY136450; AAM97115.1; -; mRNA.
DR EMBL; BT010367; AAQ56810.1; -; mRNA.
DR RefSeq; NP_201433.1; NM_126030.6.
DR RefSeq; NP_975002.1; NM_203273.2.
DR AlphaFoldDB; Q9FH57; -.
DR SMR; Q9FH57; -.
DR BioGRID; 22006; 2.
DR STRING; 3702.AT5G66320.2; -.
DR PaxDb; Q9FH57; -.
DR PRIDE; Q9FH57; -.
DR ProteomicsDB; 228965; -.
DR EnsemblPlants; AT5G66320.1; AT5G66320.1; AT5G66320.
DR EnsemblPlants; AT5G66320.2; AT5G66320.2; AT5G66320.
DR GeneID; 836764; -.
DR Gramene; AT5G66320.1; AT5G66320.1; AT5G66320.
DR Gramene; AT5G66320.2; AT5G66320.2; AT5G66320.
DR KEGG; ath:AT5G66320; -.
DR Araport; AT5G66320; -.
DR TAIR; locus:2155056; AT5G66320.
DR eggNOG; KOG1601; Eukaryota.
DR HOGENOM; CLU_045755_1_1_1; -.
DR InParanoid; Q9FH57; -.
DR OMA; ISPCNWI; -.
DR OrthoDB; 1535935at2759; -.
DR PhylomeDB; Q9FH57; -.
DR PRO; PR:Q9FH57; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FH57; baseline and differential.
DR Genevisible; Q9FH57; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0030154; P:cell differentiation; IBA:GO_Central.
DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IEA:InterPro.
DR CDD; cd00202; ZnF_GATA; 1.
DR Gene3D; 3.30.50.10; -; 1.
DR InterPro; IPR016679; TF_GATA_pln.
DR InterPro; IPR000679; Znf_GATA.
DR InterPro; IPR013088; Znf_NHR/GATA.
DR Pfam; PF00320; GATA; 1.
DR PIRSF; PIRSF016992; TF_GATA_plant; 1.
DR SMART; SM00401; ZnF_GATA; 1.
DR PROSITE; PS00344; GATA_ZN_FINGER_1; 1.
DR PROSITE; PS50114; GATA_ZN_FINGER_2; 1.
PE 2: Evidence at transcript level;
KW Activator; DNA-binding; Metal-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation; Zinc; Zinc-finger.
FT CHAIN 1..339
FT /note="GATA transcription factor 5"
FT /id="PRO_0000083443"
FT ZN_FING 245..299
FT /note="GATA-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00094"
FT REGION 68..88
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 126..145
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 163..206
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 221..242
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 314..339
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 167..174
FT /note="Nuclear localization signal"
FT /evidence="ECO:0000255"
FT COMPBIAS 177..206
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 222..236
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 322..339
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 339 AA; 37091 MW; 2FFB0ABB541D3523 CRC64;
MEQAALKSSV RKEMALKTTS PVYEEFLAVT TAQNGFSVDD FSVDDLLDLS NDDVFADEET
DLKAQHEMVR VSSEEPNDDG DALRRSSDFS GCDDFGSLPT SELSLPADDL ANLEWLSHFV
EDSFTEYSGP NLTGTPTEKP AWLTGDRKHP VTAVTEETCF KSPVPAKARS KRNRNGLKVW
SLGSSSSSGP SSSGSTSSSS SGPSSPWFSG AELLEPVVTS ERPPFPKKHK KRSAESVFSG
ELQQLQPQRK CSHCGVQKTP QWRAGPMGAK TLCNACGVRY KSGRLLPEYR PACSPTFSSE
LHSNHHRKVI EMRRKKEPTS DNETGLNQLV QSPQAVPSF
