GATA8_ARATH
ID GATA8_ARATH Reviewed; 322 AA.
AC Q9SV30;
DT 10-MAY-2005, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 134.
DE RecName: Full=GATA transcription factor 8;
GN Name=GATA8; OrderedLocusNames=At3g54810; ORFNames=F28P10.210, T5N23.3;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY ORGANIZATION.
RX PubMed=15084732; DOI=10.1104/pp.103.037788;
RA Reyes J.C., Muro-Pastor M.I., Florencio F.J.;
RT "The GATA family of transcription factors in Arabidopsis and rice.";
RL Plant Physiol. 134:1718-1732(2004).
CC -!- FUNCTION: Transcriptional activator that specifically binds 5'-GATA-3'
CC or 5'-GAT-3' motifs within gene promoters. May be involved in the
CC regulation of some light-responsive genes (By similarity).
CC {ECO:0000250}.
CC -!- INTERACTION:
CC Q9SV30; Q9ZT70: F9H3.4; NbExp=3; IntAct=EBI-25516007, EBI-25511123;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the type IV zinc-finger family. Class A
CC subfamily. {ECO:0000305}.
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DR EMBL; AL049655; CAB41103.1; -; Genomic_DNA.
DR EMBL; AL138650; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002686; AEE79293.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE79294.1; -; Genomic_DNA.
DR EMBL; AF412107; AAL06560.1; -; mRNA.
DR EMBL; AY078029; AAL77730.1; -; mRNA.
DR PIR; T06739; T06739.
DR RefSeq; NP_191041.1; NM_115338.1.
DR RefSeq; NP_850704.1; NM_180373.3.
DR AlphaFoldDB; Q9SV30; -.
DR BioGRID; 9962; 1.
DR IntAct; Q9SV30; 1.
DR STRING; 3702.AT3G54810.1; -.
DR PaxDb; Q9SV30; -.
DR PRIDE; Q9SV30; -.
DR ProteomicsDB; 230013; -.
DR EnsemblPlants; AT3G54810.1; AT3G54810.1; AT3G54810.
DR EnsemblPlants; AT3G54810.2; AT3G54810.2; AT3G54810.
DR GeneID; 824646; -.
DR Gramene; AT3G54810.1; AT3G54810.1; AT3G54810.
DR Gramene; AT3G54810.2; AT3G54810.2; AT3G54810.
DR KEGG; ath:AT3G54810; -.
DR Araport; AT3G54810; -.
DR TAIR; locus:2082637; AT3G54810.
DR eggNOG; KOG1601; Eukaryota.
DR HOGENOM; CLU_045755_2_0_1; -.
DR InParanoid; Q9SV30; -.
DR OMA; GQNIMEE; -.
DR OrthoDB; 1179789at2759; -.
DR PhylomeDB; Q9SV30; -.
DR PRO; PR:Q9SV30; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9SV30; baseline and differential.
DR Genevisible; Q9SV30; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0030154; P:cell differentiation; IBA:GO_Central.
DR GO; GO:0007623; P:circadian rhythm; IEP:TAIR.
DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IEA:InterPro.
DR GO; GO:0009845; P:seed germination; IMP:TAIR.
DR CDD; cd00202; ZnF_GATA; 1.
DR Gene3D; 3.30.50.10; -; 1.
DR InterPro; IPR016679; TF_GATA_pln.
DR InterPro; IPR000679; Znf_GATA.
DR InterPro; IPR013088; Znf_NHR/GATA.
DR Pfam; PF00320; GATA; 1.
DR PIRSF; PIRSF016992; TF_GATA_plant; 1.
DR SMART; SM00401; ZnF_GATA; 1.
DR PROSITE; PS00344; GATA_ZN_FINGER_1; 1.
DR PROSITE; PS50114; GATA_ZN_FINGER_2; 1.
PE 1: Evidence at protein level;
KW Activator; DNA-binding; Metal-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation; Zinc; Zinc-finger.
FT CHAIN 1..322
FT /note="GATA transcription factor 8"
FT /id="PRO_0000083439"
FT ZN_FING 225..279
FT /note="GATA-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00094"
FT REGION 93..168
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 147..154
FT /note="Nuclear localization signal"
FT /evidence="ECO:0000255"
FT COMPBIAS 104..141
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 152..168
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 322 AA; 35629 MW; 7BE004960FD0824B CRC64;
MIGTSFPEDL DCGNFFDNMD DLMDFPGGDI DVGFGIGDSD SFPTIWTTHH DTWPAASDPL
FSSNTNSDSS PELYVPFEDI VKVERPPSFV EETLVEKKED SFSTNTDSSS SHSQFRSSSP
VSVLESSSSS SQTTNTTSLV LPGKHGRPRT KRPRPPVQDK DRVKDNVCGG DSRLIIRIPK
QFLSDHNKMI NKKKKKKAKI TSSSSSSGID LEVNGNNVDS YSSEQYPLRK CMHCEVTKTP
QWRLGPMGPK TLCNACGVRY KSGRLFPEYR PAASPTFTPA LHSNSHKKVA EMRNKRCSDG
SYITEENDLQ GLIPNNAYIG VD
