GATL3_ARATH
ID GATL3_ARATH Reviewed; 345 AA.
AC Q0V7R1; Q8GW28; Q8LFL7; Q9FX71;
DT 23-MAR-2010, integrated into UniProtKB/Swiss-Prot.
DT 05-SEP-2006, sequence version 1.
DT 03-AUG-2022, entry version 87.
DE RecName: Full=Probable galacturonosyltransferase-like 3;
DE EC=2.4.1.-;
GN Name=GATL3; OrderedLocusNames=At1g13250; ORFNames=T6J4.1, T6J4.2;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Quinitio C., Chen H., Kim C.J., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF Clones.";
RL Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 9-345.
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=16540543; DOI=10.1073/pnas.0600120103;
RA Sterling J.D., Atmodjo M.A., Inwood S.E., Kumar Kolli V.S., Quigley H.F.,
RA Hahn M.G., Mohnen D.;
RT "Functional identification of an Arabidopsis pectin biosynthetic
RT homogalacturonan galacturonosyltransferase.";
RL Proc. Natl. Acad. Sci. U.S.A. 103:5236-5241(2006).
CC -!- FUNCTION: May be involved in pectin and/or xylans biosynthesis in cell
CC walls. {ECO:0000250}.
CC -!- PATHWAY: Glycan metabolism; pectin biosynthesis.
CC -!- SUBCELLULAR LOCATION: Golgi apparatus membrane {ECO:0000250}; Single-
CC pass type II membrane protein {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the glycosyltransferase 8 family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAG09558.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAC43692.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR EMBL; AC011810; AAG09558.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE28990.1; -; Genomic_DNA.
DR EMBL; AY084770; AAM61338.1; -; mRNA.
DR EMBL; BT026509; ABH04616.1; -; mRNA.
DR EMBL; AK119122; BAC43692.1; ALT_INIT; mRNA.
DR PIR; A86267; A86267.
DR RefSeq; NP_563925.1; NM_101196.3.
DR AlphaFoldDB; Q0V7R1; -.
DR SMR; Q0V7R1; -.
DR STRING; 3702.AT1G13250.1; -.
DR CAZy; GT8; Glycosyltransferase Family 8.
DR iPTMnet; Q0V7R1; -.
DR PaxDb; Q0V7R1; -.
DR PRIDE; Q0V7R1; -.
DR ProteomicsDB; 230451; -.
DR EnsemblPlants; AT1G13250.1; AT1G13250.1; AT1G13250.
DR GeneID; 837885; -.
DR Gramene; AT1G13250.1; AT1G13250.1; AT1G13250.
DR KEGG; ath:AT1G13250; -.
DR Araport; AT1G13250; -.
DR TAIR; locus:2205314; AT1G13250.
DR eggNOG; ENOG502QTN8; Eukaryota.
DR HOGENOM; CLU_034713_0_0_1; -.
DR InParanoid; Q0V7R1; -.
DR OMA; ARFYLPM; -.
DR OrthoDB; 1520602at2759; -.
DR PhylomeDB; Q0V7R1; -.
DR UniPathway; UPA00845; -.
DR PRO; PR:Q0V7R1; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q0V7R1; baseline and differential.
DR Genevisible; Q0V7R1; AT.
DR GO; GO:0005794; C:Golgi apparatus; IDA:TAIR.
DR GO; GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0047262; F:polygalacturonate 4-alpha-galacturonosyltransferase activity; ISS:TAIR.
DR GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW.
DR GO; GO:0045489; P:pectin biosynthetic process; IEA:UniProtKB-UniPathway.
DR Gene3D; 3.90.550.10; -; 1.
DR InterPro; IPR002495; Glyco_trans_8.
DR InterPro; IPR029044; Nucleotide-diphossugar_trans.
DR Pfam; PF01501; Glyco_transf_8; 1.
DR SUPFAM; SSF53448; SSF53448; 1.
PE 2: Evidence at transcript level;
KW Cell wall biogenesis/degradation; Glycoprotein; Glycosyltransferase;
KW Golgi apparatus; Membrane; Reference proteome; Signal-anchor; Transferase;
KW Transmembrane; Transmembrane helix.
FT CHAIN 1..345
FT /note="Probable galacturonosyltransferase-like 3"
FT /id="PRO_0000392605"
FT TOPO_DOM 1..7
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 8..28
FT /note="Helical; Signal-anchor for type II membrane protein"
FT /evidence="ECO:0000255"
FT TOPO_DOM 29..345
FT /note="Lumenal"
FT /evidence="ECO:0000255"
FT CARBOHYD 197
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CONFLICT 338
FT /note="Y -> F (in Ref. 3; AAM61338)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 345 AA; 39852 MW; 736E6B036D5BCC2A CRC64;
MSSLRLRLCL LLLLPITISC VTVTLTDLPA FREAPAFRNG RECSKTTWIP SDHEHNPSII
HIAMTLDAIY LRGSVAGVFS VLQHASCPEN IVFHFIATHR RSADLRRIIS STFPYLTYHI
YHFDPNLVRS KISSSIRRAL DQPLNYARIY LADLLPIAVR RVIYFDSDLV VVDDVAKLWR
IDLRRHVVGA PEYCHANFTN YFTSRFWSSQ GYKSALKDRK PCYFNTGVMV IDLGKWRERR
VTVKLETWMR IQKRHRIYEL GSLPPFLLVF AGDVEPVEHR WNQHGLGGDN LEGLCRNLHP
GPVSLLHWSG KGKPWLRLDS RRPCPLDSLW APYDLFRYSP LISDS
