GBB_ORYSJ
ID GBB_ORYSJ Reviewed; 380 AA.
AC Q40687; A0A0P0W176; F6M2M6; Q0DPR1; Q10FF8; Q7G5X0;
DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1996, sequence version 1.
DT 03-AUG-2022, entry version 151.
DE RecName: Full=Guanine nucleotide-binding protein subunit beta {ECO:0000305};
DE AltName: Full=WD40 repeat-containing protein 80 {ECO:0000303|PubMed:22429805};
DE Short=OsWD40-80 {ECO:0000303|PubMed:22429805};
GN Name=RGB1 {ECO:0000303|PubMed:8665097};
GN OrderedLocusNames=Os03g0669200 {ECO:0000312|EMBL:BAF12777.2},
GN LOC_Os03g46650 {ECO:0000312|EMBL:ABF98102.1}; ORFNames=OSJNBa0039O18.9;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=8665097; DOI=10.1093/oxfordjournals.pcp.a028935;
RA Ishikawa A., Iwasaki Y., Asahi T.;
RT "Molecular cloning and characterization of a cDNA for the beta subunit of a
RT G protein from rice.";
RL Plant Cell Physiol. 37:223-228(1996).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RG The rice full-length cDNA consortium;
RT "Oryza sativa full length cDNA.";
RL Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases.
RN [7]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 1-378.
RC STRAIN=cv. Nipponbare;
RA Zhang D., Liang J.;
RT "Screening and Identifying the Interaction Proteins of RACK1 in Rice.";
RL Submitted (MAR-2011) to the EMBL/GenBank/DDBJ databases.
RN [8]
RP SUBUNIT, INTERACTION WITH RGG1 AND RGG2, AND SUBCELLULAR LOCATION.
RX PubMed=15078334; DOI=10.1111/j.1365-313x.2004.02046.x;
RA Kato C., Mizutani T., Tamaki H., Kumagai H., Kamiya T., Hirobe A.,
RA Fujisawa Y., Kato H., Iwasaki Y.;
RT "Characterization of heterotrimeric G protein complexes in rice plasma
RT membrane.";
RL Plant J. 38:320-331(2004).
RN [9]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=22429805; DOI=10.1186/1471-2164-13-100;
RA Ouyang Y., Huang X., Lu Z., Yao J.;
RT "Genomic survey, expression profile and co-expression network analysis of
RT OsWD40 family in rice.";
RL BMC Genomics 13:100-100(2012).
CC -!- FUNCTION: Guanine nucleotide-binding proteins (G proteins) are involved
CC as modulators or transducers in various transmembrane signaling
CC systems. The beta and gamma chains are required for the GTPase
CC activity, for replacement of GDP by GTP, and for G protein-effector
CC interaction. {ECO:0000305}.
CC -!- SUBUNIT: G proteins are composed of 3 units, alpha, beta and gamma.
CC Interacts with the gamma subunits RGG1 and RGG2.
CC {ECO:0000269|PubMed:15078334}.
CC -!- INTERACTION:
CC Q40687; Q0DJ33: GPA1; NbExp=2; IntAct=EBI-1100119, EBI-1100098;
CC Q40687; Q75WU1: RGG1; NbExp=4; IntAct=EBI-1100119, EBI-1100093;
CC Q40687; Q6YXX9: RGG2; NbExp=4; IntAct=EBI-1100119, EBI-1100089;
CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000269|PubMed:22429805}.
CC -!- SIMILARITY: Belongs to the WD repeat G protein beta family.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF12777.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; X89737; CAA61889.1; -; Genomic_DNA.
DR EMBL; AC133930; AAP44640.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF98102.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF12777.2; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014959; BAS85669.1; -; Genomic_DNA.
DR EMBL; AK242811; BAH01349.1; -; mRNA.
DR EMBL; JF712554; AEE69019.1; -; mRNA.
DR PIR; T03765; T03765.
DR RefSeq; XP_015631079.1; XM_015775593.1.
DR AlphaFoldDB; Q40687; -.
DR SMR; Q40687; -.
DR IntAct; Q40687; 3.
DR STRING; 4530.OS03T0669200-01; -.
DR PaxDb; Q40687; -.
DR PRIDE; Q40687; -.
DR EnsemblPlants; Os03t0669200-01; Os03t0669200-01; Os03g0669200.
DR GeneID; 4333680; -.
DR Gramene; Os03t0669200-01; Os03t0669200-01; Os03g0669200.
DR KEGG; osa:4333680; -.
DR eggNOG; KOG0286; Eukaryota.
DR HOGENOM; CLU_000288_57_34_1; -.
DR InParanoid; Q40687; -.
DR OMA; PLDSQWV; -.
DR OrthoDB; 704786at2759; -.
DR PlantReactome; R-OSA-9035605; Regulation of seed size.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; Q40687; OS.
DR GO; GO:0080008; C:Cul4-RING E3 ubiquitin ligase complex; IEA:EnsemblPlants.
DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR GO; GO:0005783; C:endoplasmic reticulum; IEA:EnsemblPlants.
DR GO; GO:0005834; C:heterotrimeric G-protein complex; IBA:GO_Central.
DR GO; GO:0005886; C:plasma membrane; IDA:UniProtKB.
DR GO; GO:0030159; F:signaling receptor complex adaptor activity; IBA:GO_Central.
DR GO; GO:0050832; P:defense response to fungus; IEA:EnsemblPlants.
DR GO; GO:0030968; P:endoplasmic reticulum unfolded protein response; IEA:EnsemblPlants.
DR GO; GO:0010154; P:fruit development; IEA:EnsemblPlants.
DR GO; GO:0007186; P:G protein-coupled receptor signaling pathway; IEP:Gramene.
DR GO; GO:0009867; P:jasmonic acid mediated signaling pathway; IEA:EnsemblPlants.
DR GO; GO:0048527; P:lateral root development; IEA:EnsemblPlants.
DR GO; GO:1905392; P:plant organ morphogenesis; IEA:EnsemblPlants.
DR GO; GO:0072593; P:reactive oxygen species metabolic process; IEA:EnsemblPlants.
DR GO; GO:2000280; P:regulation of root development; IEA:EnsemblPlants.
DR GO; GO:0009723; P:response to ethylene; IEA:EnsemblPlants.
DR GO; GO:0009991; P:response to extracellular stimulus; IEA:EnsemblPlants.
DR GO; GO:0009845; P:seed germination; IEA:EnsemblPlants.
DR GO; GO:0010118; P:stomatal movement; IEA:EnsemblPlants.
DR Gene3D; 2.130.10.10; -; 1.
DR InterPro; IPR020472; G-protein_beta_WD-40_rep.
DR InterPro; IPR001632; Gprotein_B.
DR InterPro; IPR016346; Guanine_nucleotide-bd_bsu.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR001680; WD40_repeat.
DR InterPro; IPR019775; WD40_repeat_CS.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR PANTHER; PTHR19850; PTHR19850; 1.
DR Pfam; PF00400; WD40; 6.
DR PRINTS; PR00319; GPROTEINB.
DR PRINTS; PR00320; GPROTEINBRPT.
DR SMART; SM00320; WD40; 7.
DR SUPFAM; SSF50978; SSF50978; 1.
DR PROSITE; PS00678; WD_REPEATS_1; 3.
DR PROSITE; PS50082; WD_REPEATS_2; 5.
DR PROSITE; PS50294; WD_REPEATS_REGION; 1.
PE 1: Evidence at protein level;
KW Cell membrane; Membrane; Reference proteome; Repeat; Transducer; WD repeat.
FT CHAIN 1..380
FT /note="Guanine nucleotide-binding protein subunit beta"
FT /id="PRO_0000127725"
FT REPEAT 64..94
FT /note="WD 1"
FT REPEAT 106..136
FT /note="WD 2"
FT REPEAT 155..186
FT /note="WD 3"
FT REPEAT 203..234
FT /note="WD 4"
FT REPEAT 247..277
FT /note="WD 5"
FT REPEAT 296..326
FT /note="WD 6"
FT REPEAT 342..372
FT /note="WD 7"
SQ SEQUENCE 380 AA; 41752 MW; 36CE374E2A3E8EB0 CRC64;
MASVAELKEK HAAATASVNS LRERLRQRRQ MLLDTDVERY SRTQGRTPVS FNPTDLVCCR
TLQGHSGKVY SLDWTPEKNW IVSASQDGRL IVWNALTSQK THAIKLHCPW VMTCAFAPNG
QSVACGGLDS ACSIFNLNSQ ADRDGNIPVS RILTGHKGYV SSCQYVPDQE TRLITSSGDQ
TCVLWDVTTG QRISIFGGEF PSGHTADVLS LSINSSNSNM FVSGSCDATV RLWDIRIASR
AVRTYHGHEG DINSVKFFPD GQRFGTGSDD GTCRLFDVRT GHQLQVYSRE PDRNDNELPT
VTSIAFSISG RLLFAGYSNG DCYVWDTLLA EVVLNLGNLQ NSHEGRISCL GLSSDGSALC
TGSWDKNLKI WAFSGHRKIV
