GDT13_ARATH
ID GDT13_ARATH Reviewed; 293 AA.
AC Q93Y38; B9DF76; Q9FG57;
DT 05-OCT-2010, integrated into UniProtKB/Swiss-Prot.
DT 01-DEC-2001, sequence version 1.
DT 03-AUG-2022, entry version 109.
DE RecName: Full=GDT1-like protein 3;
DE Flags: Precursor;
GN OrderedLocusNames=At5g36290; ORFNames=T30G6.16;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RA Kaneko T., Katoh T., Asamizu E., Sato S., Nakamura Y., Kotani H.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. XI.";
RL Submitted (APR-1999) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-187.
RC STRAIN=cv. Columbia;
RX PubMed=19423640; DOI=10.1093/dnares/dsp009;
RA Iida K., Fukami-Kobayashi K., Toyoda A., Sakaki Y., Kobayashi M., Seki M.,
RA Shinozaki K.;
RT "Analysis of multiple occurrences of alternative splicing events in
RT Arabidopsis thaliana using novel sequenced full-length cDNAs.";
RL DNA Res. 16:155-164(2009).
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Multi-pass membrane
CC protein {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the GDT1 family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAB09369.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AB026661; BAB09369.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002688; AED94065.1; -; Genomic_DNA.
DR EMBL; CP002688; AED94066.1; -; Genomic_DNA.
DR EMBL; AY054477; AAK96668.1; -; mRNA.
DR EMBL; BT009678; AAP80179.1; -; mRNA.
DR EMBL; AY085108; AAM61662.1; -; mRNA.
DR EMBL; AK316663; BAH19393.1; -; mRNA.
DR RefSeq; NP_568535.1; NM_123020.5.
DR RefSeq; NP_851098.1; NM_180767.2.
DR AlphaFoldDB; Q93Y38; -.
DR STRING; 3702.AT5G36290.2; -.
DR SwissPalm; Q93Y38; -.
DR PaxDb; Q93Y38; -.
DR PRIDE; Q93Y38; -.
DR ProteomicsDB; 247120; -.
DR EnsemblPlants; AT5G36290.1; AT5G36290.1; AT5G36290.
DR EnsemblPlants; AT5G36290.2; AT5G36290.2; AT5G36290.
DR GeneID; 833627; -.
DR Gramene; AT5G36290.1; AT5G36290.1; AT5G36290.
DR Gramene; AT5G36290.2; AT5G36290.2; AT5G36290.
DR KEGG; ath:AT5G36290; -.
DR Araport; AT5G36290; -.
DR TAIR; locus:2183632; AT5G36290.
DR eggNOG; KOG2881; Eukaryota.
DR HOGENOM; CLU_040186_0_1_1; -.
DR InParanoid; Q93Y38; -.
DR OMA; IGHAFCT; -.
DR OrthoDB; 919566at2759; -.
DR PhylomeDB; Q93Y38; -.
DR PRO; PR:Q93Y38; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q93Y38; baseline and differential.
DR Genevisible; Q93Y38; AT.
DR GO; GO:0005794; C:Golgi apparatus; IDA:TAIR.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0015085; F:calcium ion transmembrane transporter activity; IBA:GO_Central.
DR GO; GO:0005384; F:manganese ion transmembrane transporter activity; IBA:GO_Central.
DR GO; GO:0046873; F:metal ion transmembrane transporter activity; IBA:GO_Central.
DR GO; GO:0070588; P:calcium ion transmembrane transport; IBA:GO_Central.
DR GO; GO:0032468; P:Golgi calcium ion homeostasis; IBA:GO_Central.
DR GO; GO:0032472; P:Golgi calcium ion transport; IBA:GO_Central.
DR GO; GO:0071421; P:manganese ion transmembrane transport; IBA:GO_Central.
DR InterPro; IPR001727; Gdt1.
DR InterPro; IPR036259; MFS_trans_sf.
DR PANTHER; PTHR12608; PTHR12608; 1.
DR Pfam; PF01169; UPF0016; 2.
DR SUPFAM; SSF103473; SSF103473; 1.
PE 2: Evidence at transcript level;
KW Membrane; Reference proteome; Signal; Transmembrane; Transmembrane helix.
FT SIGNAL 1..25
FT /evidence="ECO:0000255"
FT CHAIN 26..293
FT /note="GDT1-like protein 3"
FT /id="PRO_0000398766"
FT TRANSMEM 89..109
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 115..135
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 148..168
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 200..220
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 238..258
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 272..292
FT /note="Helical"
FT /evidence="ECO:0000255"
SQ SEQUENCE 293 AA; 31525 MW; 67F02E7ACCE0F026 CRC64;
MGLISNPTRL ILVATIFFLV SSISGQDSVV ENNERQESEG SGKELGRRGM VGTERIGVDT
VVDNIGALGL NLDLDATAPS VFDALFSSFS MILVTEIGDE TFIIAALMAM RHPKATVLSG
ALSALFVMTI LSTGLGRIVP NLISRKHTNS AATVLYAFFG LRLLYIAWRS TDSKSNQKKE
MEEVEEKLES GQGKTPFRRL FSRFCTPIFL ESFILTFLAE WGDRSQIATI ALATHKNAIG
VAIGASIGHT VCTSLAVVGG SMLASRISQR TVATVGGLLF LGFSVSSYFY PPL
