GHD7_ORYSJ
ID GHD7_ORYSJ Reviewed; 257 AA.
AC E5RQA1; Q8LGV7;
DT 05-OCT-2016, integrated into UniProtKB/Swiss-Prot.
DT 08-MAR-2011, sequence version 1.
DT 03-AUG-2022, entry version 46.
DE RecName: Full=Transcription factor GHD7 {ECO:0000305};
DE AltName: Full=Protein GRAIN NUMBER PLANT HEIGHT AND HEADING DATE 7 {ECO:0000305};
GN Name=GHD7 {ECO:0000312|EMBL:BAJ53926.1};
GN OrderedLocusNames=Os07g0261200 {ECO:0000312|EMBL:BAT00895.1},
GN LOC_Os07g15770 {ECO:0000305};
GN ORFNames=P0046D03.119 {ECO:0000312|EMBL:BAC07164.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=cv. Khao Nam Jen, and cv. Khau Mac Kho;
RX PubMed=21229229; DOI=10.1007/s00122-010-1524-1;
RA Ebana K., Shibaya T., Wu J., Matsubara K., Kanamori H., Yamane H.,
RA Yamanouchi U., Mizubayashi T., Kono I., Shomura A., Ito S., Ando T.,
RA Hori K., Matsumoto T., Yano M.;
RT "Uncovering of major genetic factors generating naturally occurring
RT variation in heading date among Asian rice cultivars.";
RL Theor. Appl. Genet. 122:1199-1210(2011).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RX PubMed=22666315; DOI=10.1371/journal.pone.0034021;
RA Lu L., Yan W., Xue W., Shao D., Xing Y.;
RT "Evolution and association analysis of ghd7 in rice.";
RL PLoS ONE 7:E34021-E34021(2012).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP FUNCTION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY, INDUCTION, AND
RP DISRUPTION PHENOTYPE.
RX PubMed=18454147; DOI=10.1038/ng.143;
RA Xue W., Xing Y., Weng X., Zhao Y., Tang W., Wang L., Zhou H., Yu S., Xu C.,
RA Li X., Zhang Q.;
RT "Natural variation in Ghd7 is an important regulator of heading date and
RT yield potential in rice.";
RL Nat. Genet. 40:761-767(2008).
RN [7]
RP FUNCTION, INTERACTION WITH HD16/EL1, AND PHOSPHORYLATION AT SER-68.
RC STRAIN=cv. Koshihikari, and cv. Nipponbare;
RX PubMed=23789941; DOI=10.1111/tpj.12268;
RA Hori K., Ogiso-Tanaka E., Matsubara K., Yamanouchi U., Ebana K., Yano M.;
RT "Hd16, a gene for casein kinase I, is involved in the control of rice
RT flowering time by modulating the day-length response.";
RL Plant J. 76:36-46(2013).
CC -!- FUNCTION: Probable transcription factor involved in the regulation of
CC flowering time under long day (LD) conditions. Plays a major role as
CC repressor of flowering. Controls flowering time by negatively
CC regulating the expression of EHD1 and HD3A.
CC {ECO:0000269|PubMed:18454147, ECO:0000269|PubMed:23789941}.
CC -!- SUBUNIT: Interacts with HD16/EL1. {ECO:0000269|PubMed:23789941}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:18454147}.
CC -!- TISSUE SPECIFICITY: Expressed in the apical meristem, developing
CC leaves, leaf sheaths of young seedling, root meristem, epidermal layer
CC of developing stems and branch-primordia of developing panicles.
CC {ECO:0000269|PubMed:18454147}.
CC -!- INDUCTION: Circadian-regulation under long day (LD) conditions.
CC Expression increases during daytime, peaks at the end of the light
CC period and gradually decreases during the dark period.
CC {ECO:0000269|PubMed:18454147}.
CC -!- PTM: Phosphorylated at Ser-68 by HD16/EL1, a casein kinase 1.
CC {ECO:0000305|PubMed:23789941}.
CC -!- DISRUPTION PHENOTYPE: Early flowering phenotype under long day (LD) and
CC natural day (ND) conditions. Decreased plant size, number of grains per
CC panicle, yield and dry weight per plant. {ECO:0000269|PubMed:18454147}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAC07164.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AB564472; BAJ53926.1; -; Genomic_DNA.
DR EMBL; AB564474; BAJ53928.1; -; Genomic_DNA.
DR EMBL; JF926532; AEG78653.1; -; Genomic_DNA.
DR EMBL; AP005307; BAC07164.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014963; BAT00895.1; -; Genomic_DNA.
DR RefSeq; XP_015646270.1; XM_015790784.1.
DR AlphaFoldDB; E5RQA1; -.
DR SMR; E5RQA1; -.
DR STRING; 4530.OS07T0261200-00; -.
DR iPTMnet; E5RQA1; -.
DR PaxDb; E5RQA1; -.
DR PRIDE; E5RQA1; -.
DR EnsemblPlants; Os07t0261200-01; Os07t0261200-01; Os07g0261200.
DR GeneID; 107276161; -.
DR Gramene; Os07t0261200-01; Os07t0261200-01; Os07g0261200.
DR KEGG; osa:107276161; -.
DR eggNOG; KOG1601; Eukaryota.
DR HOGENOM; CLU_078080_0_0_1; -.
DR OMA; VAWLFDD; -.
DR OrthoDB; 1453319at2759; -.
DR PlantReactome; R-OSA-8934036; Long day regulated expression of florigens.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0009908; P:flower development; IEA:UniProtKB-KW.
DR GO; GO:0048579; P:negative regulation of long-day photoperiodism, flowering; IMP:UniProtKB.
DR GO; GO:0009909; P:regulation of flower development; IBA:GO_Central.
DR InterPro; IPR010402; CCT_domain.
DR InterPro; IPR045281; CONSTANS-like.
DR PANTHER; PTHR31319; PTHR31319; 1.
DR Pfam; PF06203; CCT; 1.
DR PROSITE; PS51017; CCT; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Flowering; Nucleus; Phosphoprotein; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..257
FT /note="Transcription factor GHD7"
FT /id="PRO_0000437430"
FT DOMAIN 190..232
FT /note="CCT"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00357"
FT REGION 226..245
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 198..204
FT /note="Nuclear localization signal"
FT /evidence="ECO:0000255"
FT MOD_RES 68
FT /note="Phosphoserine; by CK1"
FT /evidence="ECO:0000305|PubMed:23789941"
SQ SEQUENCE 257 AA; 27308 MW; A5E50E751995D8E5 CRC64;
MSMGPAAGEG CGLCGADGGG CCSRHRHDDD GFPFVFPPSA CQGIGAPAPP VHEFQFFGND
GGGDDGESVA WLFDDYPPPS PVAAAAGMHH RQPPYDGVVA PPSLFRRNTG AGGLTFDVSL
GERPDLDAGL GLGGGGGRHA EAAASATIMS YCGSTFTDAA SSMPKEMVAA MADDGESLNP
NTVVGAMVER EAKLMRYKEK RKKRCYEKQI RYASRKAYAE MRPRVRGRFA KEPDQEAVAP
PSTYVDPSRL ELGQWFR
