GL19_ARATH
ID GL19_ARATH Reviewed; 222 AA.
AC Q9FMB0;
DT 29-AUG-2001, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 129.
DE RecName: Full=Putative germin-like protein subfamily 1 member 9;
DE Flags: Precursor;
GN OrderedLocusNames=At5g38910; ORFNames=K15E6.14, K15E6_90;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9628582; DOI=10.1093/dnares/5.1.41;
RA Sato S., Kaneko T., Kotani H., Nakamura Y., Asamizu E., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. IV. Sequence
RT features of the regions of 1,456,315 bp covered by nineteen physically
RT assigned P1 and TAC clones.";
RL DNA Res. 5:41-54(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
CC -!- FUNCTION: May play a role in plant defense. Probably has no oxalate
CC oxidase activity even if the active site is conserved.
CC -!- SUBUNIT: Oligomer (believed to be a pentamer but probably hexamer).
CC {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Secreted, extracellular space, apoplast
CC {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the germin family. {ECO:0000305}.
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DR EMBL; AB009048; BAB08648.1; -; Genomic_DNA.
DR EMBL; CP002688; AED94374.1; -; Genomic_DNA.
DR RefSeq; NP_198707.1; NM_123253.2.
DR AlphaFoldDB; Q9FMB0; -.
DR SMR; Q9FMB0; -.
DR STRING; 3702.AT5G38910.1; -.
DR PaxDb; Q9FMB0; -.
DR ProteomicsDB; 247253; -.
DR EnsemblPlants; AT5G38910.1; AT5G38910.1; AT5G38910.
DR GeneID; 833883; -.
DR Gramene; AT5G38910.1; AT5G38910.1; AT5G38910.
DR KEGG; ath:AT5G38910; -.
DR Araport; AT5G38910; -.
DR TAIR; locus:2152317; AT5G38910.
DR HOGENOM; CLU_015790_0_0_1; -.
DR InParanoid; Q9FMB0; -.
DR OMA; EILYVAY; -.
DR OrthoDB; 1164277at2759; -.
DR PhylomeDB; Q9FMB0; -.
DR PRO; PR:Q9FMB0; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FMB0; baseline and differential.
DR Genevisible; Q9FMB0; AT.
DR GO; GO:0048046; C:apoplast; IEA:UniProtKB-SubCell.
DR GO; GO:0030145; F:manganese ion binding; IEA:InterPro.
DR Gene3D; 2.60.120.10; -; 1.
DR InterPro; IPR006045; Cupin_1.
DR InterPro; IPR001929; Germin.
DR InterPro; IPR019780; Germin_Mn-BS.
DR InterPro; IPR014710; RmlC-like_jellyroll.
DR InterPro; IPR011051; RmlC_Cupin_sf.
DR Pfam; PF00190; Cupin_1; 1.
DR PRINTS; PR00325; GERMIN.
DR SMART; SM00835; Cupin_1; 1.
DR SUPFAM; SSF51182; SSF51182; 1.
DR PROSITE; PS00725; GERMIN; 1.
PE 3: Inferred from homology;
KW Apoplast; Disulfide bond; Glycoprotein; Manganese; Metal-binding;
KW Reference proteome; Secreted; Signal.
FT SIGNAL 1..22
FT /evidence="ECO:0000255"
FT CHAIN 23..222
FT /note="Putative germin-like protein subfamily 1 member 9"
FT /id="PRO_0000010809"
FT DOMAIN 63..213
FT /note="Cupin type-1"
FT /evidence="ECO:0000255"
FT BINDING 111
FT /ligand="Mn(2+)"
FT /ligand_id="ChEBI:CHEBI:29035"
FT /evidence="ECO:0000250"
FT BINDING 113
FT /ligand="Mn(2+)"
FT /ligand_id="ChEBI:CHEBI:29035"
FT /evidence="ECO:0000250"
FT BINDING 118
FT /ligand="Mn(2+)"
FT /ligand_id="ChEBI:CHEBI:29035"
FT /evidence="ECO:0000250"
FT BINDING 159
FT /ligand="Mn(2+)"
FT /ligand_id="ChEBI:CHEBI:29035"
FT /evidence="ECO:0000250"
FT CARBOHYD 78
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT DISULFID 32..49
FT /evidence="ECO:0000250"
SQ SEQUENCE 222 AA; 23884 MW; BB925CC41A905A4E CRC64;
MKSFSFLAVL SILAITLSLS KASDPSSLQD FCVGVNTPAD GVFVNGKFCK DPKLVTVEDF
FFTGLHEARP PNPKTGSNVT AVNVNNLPGL NTLGISLVRI DYGVYGQNPP HTHPRASEVL
YVAVGTLFVG FVTSNPENRL FSKTLYEGDV FVFPQGLIHF QVNVGKYPAV AFAGLSSQNP
GVITIADTVF GSNPQIDPSF LASAFQVDPK IVMDLQTKFI KP