ID   GLK1_ORYSJ              Reviewed;         455 AA.
AC   Q5Z5I4; A0A0P0WWC7; B7E734; Q5Z5I3;
DT   03-MAY-2011, integrated into UniProtKB/Swiss-Prot.
DT   23-NOV-2004, sequence version 1.
DT   03-AUG-2022, entry version 114.
DE   RecName: Full=Probable transcription factor GLK1;
DE   AltName: Full=Golden2-like protein 1;
DE            Short=OsGLK1;
GN   Name=GLK1; OrderedLocusNames=Os06g0348800, LOC_Os06g24070;
GN   ORFNames=OSJNBa0031J07.13;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
RN   [5]
RP   TISSUE SPECIFICITY, AND INDUCTION.
RX   PubMed=11340194; DOI=10.2307/3871376;
RA   Rossini L., Cribb L., Martin D.J., Langdale J.A.;
RT   "The maize golden2 gene defines a novel class of transcriptional regulators
RT   in plants.";
RL   Plant Cell 13:1231-1244(2001).
RN   [6]
RP   FUNCTION.
RX   PubMed=19808806; DOI=10.1093/pcp/pcp138;
RA   Nakamura H., Muramatsu M., Hakata M., Ueno O., Nagamura Y., Hirochika H.,
RA   Takano M., Ichikawa H.;
RT   "Ectopic overexpression of the transcription factor OsGLK1 induces
RT   chloroplast development in non-green rice cells.";
RL   Plant Cell Physiol. 50:1933-1949(2009).
CC   -!- FUNCTION: Probable transcriptional activator that promotes chloroplast
CC       development. Acts as an activator of nuclear photosynthetic genes
CC       involved in chlorophyll biosynthesis, light harvesting, and electron
CC       transport. {ECO:0000269|PubMed:19808806}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC   -!- TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:11340194}.
CC   -!- INDUCTION: By light. {ECO:0000269|PubMed:11340194}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=BAD62071.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC       Sequence=BAF19497.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC       Sequence=BAG88181.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC       Sequence=BAH00827.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
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DR   EMBL; AP005688; BAD62070.1; -; Genomic_DNA.
DR   EMBL; AP005688; BAD62071.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; AP008212; BAF19497.2; ALT_SEQ; Genomic_DNA.
DR   EMBL; AP014962; BAS97664.1; -; Genomic_DNA.
DR   EMBL; AK061946; BAG88181.1; ALT_INIT; mRNA.
DR   EMBL; AK065184; BAG89405.1; -; mRNA.
DR   EMBL; AK098909; BAG93805.1; -; mRNA.
DR   EMBL; AK122161; BAH00827.1; ALT_INIT; mRNA.
DR   RefSeq; XP_015644244.1; XM_015788758.1.
DR   AlphaFoldDB; Q5Z5I4; -.
DR   SMR; Q5Z5I4; -.
DR   STRING; 4530.OS06T0348800-01; -.
DR   PaxDb; Q5Z5I4; -.
DR   PRIDE; Q5Z5I4; -.
DR   EnsemblPlants; Os06t0348800-01; Os06t0348800-01; Os06g0348800.
DR   EnsemblPlants; Os06t0348800-03; Os06t0348800-03; Os06g0348800.
DR   GeneID; 4340977; -.
DR   Gramene; Os06t0348800-01; Os06t0348800-01; Os06g0348800.
DR   Gramene; Os06t0348800-03; Os06t0348800-03; Os06g0348800.
DR   KEGG; osa:4340977; -.
DR   eggNOG; ENOG502QWCV; Eukaryota.
DR   InParanoid; Q5Z5I4; -.
DR   OMA; ANVPPAC; -.
DR   OrthoDB; 1174914at2759; -.
DR   Proteomes; UP000000763; Chromosome 6.
DR   Proteomes; UP000059680; Chromosome 6.
DR   ExpressionAtlas; Q5Z5I4; baseline and differential.
DR   Genevisible; Q5Z5I4; OS.
DR   GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
DR   GO; GO:0000976; F:transcription cis-regulatory region binding; IBA:GO_Central.
DR   GO; GO:0010638; P:positive regulation of organelle organization; IGI:UniProtKB.
DR   GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IGI:UniProtKB.
DR   InterPro; IPR044825; GLK1/2-like.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR017930; Myb_dom.
DR   InterPro; IPR006447; Myb_dom_plants.
DR   PANTHER; PTHR31312; PTHR31312; 1.
DR   Pfam; PF00249; Myb_DNA-binding; 1.
DR   SUPFAM; SSF46689; SSF46689; 1.
DR   TIGRFAMs; TIGR01557; myb_SHAQKYF; 1.
DR   PROSITE; PS51294; HTH_MYB; 1.
PE   2: Evidence at transcript level;
KW   DNA-binding; Nucleus; Reference proteome; Transcription;
KW   Transcription regulation.
FT   CHAIN           1..455
FT                   /note="Probable transcription factor GLK1"
FT                   /id="PRO_0000408387"
FT   DOMAIN          177..236
FT                   /note="HTH myb-type"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT   DNA_BIND        207..232
FT                   /note="H-T-H motif"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT   REGION          145..183
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        149..165
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        166..183
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   455 AA;  48515 MW;  5900F63B5AA31C54 CRC64;
     MLAVSPAMCP DIEDRAAVAG DAGMEVVGMS SDDMDQFDFS VDDIDFGDFF LRLEDGDVLP
     DLEVDPAEIF TDFEAIATSG GEGVQDQEVP TVELLAPADD VGVLDPCGDV VVGEENAAFA
     GAGEEKGGCN QDDDAGEANV DDGAAAVEAK SSSPSSTTSS SQEAESRHKS SSKSSHGKKK
     AKVDWTPELH RRFVQAVEQL GIDKAVPSRI LEIMGIDSLT RHNIASHLQK YRSHRKHMIA
     REAEAASWTQ RRQIYAAGGG AVAKRPESNA WTVPTIGFPP PPPPPPSPAP IQHFARPLHV
     WGHPTMDPSR VPVWPPRHLV PRGPAPPWVP PPPPSDPAFW HHPYMRGPAH VPTQGTPCMA
     MPMPAARFPA PPVPGVVPCP MYRPLTPPAL ASKNQQDAQL QLQVQPSSES IDAAIGDVLS
     KPWLPLPLGL KPPSVDSVMG ELQRQGVANV PPACG