GLK2_ORYSJ
ID GLK2_ORYSJ Reviewed; 539 AA.
AC Q5NAN5; A0A0P0V0C1; Q5NAN4;
DT 03-MAY-2011, integrated into UniProtKB/Swiss-Prot.
DT 01-FEB-2005, sequence version 1.
DT 03-AUG-2022, entry version 112.
DE RecName: Full=Probable transcription factor GLK2;
DE AltName: Full=Golden2-like protein 2;
DE Short=OsGLK2;
GN Name=GLK2; OrderedLocusNames=Os01g0239000, LOC_Os01g13740;
GN ORFNames=OSJNBa0086P08.28-1, OSJNBa0086P08.28-2;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP TISSUE SPECIFICITY, AND INDUCTION.
RX PubMed=11340194; DOI=10.2307/3871376;
RA Rossini L., Cribb L., Martin D.J., Langdale J.A.;
RT "The maize golden2 gene defines a novel class of transcriptional regulators
RT in plants.";
RL Plant Cell 13:1231-1244(2001).
CC -!- FUNCTION: Probable transcriptional activator that promotes chloroplast
CC development. Acts as an activator of nuclear photosynthetic genes
CC involved in chlorophyll biosynthesis, light harvesting, and electron
CC transport (By similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q5NAN5-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q5NAN5-2; Sequence=VSP_041080, VSP_041081;
CC -!- TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:11340194}.
CC -!- INDUCTION: By light. {ECO:0000269|PubMed:11340194}.
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DR EMBL; AP002855; BAD81484.1; -; Genomic_DNA.
DR EMBL; AP002855; BAD81485.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF04456.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS71255.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS71256.1; -; Genomic_DNA.
DR EMBL; AK121019; BAH00278.1; -; mRNA.
DR RefSeq; XP_015615905.1; XM_015760419.1. [Q5NAN5-1]
DR AlphaFoldDB; Q5NAN5; -.
DR SMR; Q5NAN5; -.
DR STRING; 4530.OS01T0239000-02; -.
DR PaxDb; Q5NAN5; -.
DR PRIDE; Q5NAN5; -.
DR EnsemblPlants; Os01t0239000-01; Os01t0239000-01; Os01g0239000. [Q5NAN5-2]
DR EnsemblPlants; Os01t0239000-02; Os01t0239000-02; Os01g0239000. [Q5NAN5-1]
DR GeneID; 4326363; -.
DR Gramene; Os01t0239000-01; Os01t0239000-01; Os01g0239000. [Q5NAN5-2]
DR Gramene; Os01t0239000-02; Os01t0239000-02; Os01g0239000. [Q5NAN5-1]
DR KEGG; osa:4326363; -.
DR eggNOG; ENOG502S88Y; Eukaryota.
DR HOGENOM; CLU_050767_0_0_1; -.
DR InParanoid; Q5NAN5; -.
DR OMA; KRQMYTA; -.
DR OrthoDB; 1174914at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR Genevisible; Q5NAN5; OS.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IBA:GO_Central.
DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IBA:GO_Central.
DR InterPro; IPR044825; GLK1/2-like.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR006447; Myb_dom_plants.
DR PANTHER; PTHR31312; PTHR31312; 1.
DR Pfam; PF00249; Myb_DNA-binding; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR TIGRFAMs; TIGR01557; myb_SHAQKYF; 1.
DR PROSITE; PS51294; HTH_MYB; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..539
FT /note="Probable transcription factor GLK2"
FT /id="PRO_0000408388"
FT DOMAIN 212..271
FT /note="HTH myb-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DNA_BIND 242..267
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT REGION 86..218
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 137..164
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 191..208
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 219..226
FT /note="DWTPELHR -> YPYYQPHN (in isoform 2)"
FT /evidence="ECO:0000305"
FT /id="VSP_041080"
FT VAR_SEQ 227..539
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000305"
FT /id="VSP_041081"
SQ SEQUENCE 539 AA; 56284 MW; 06CC6781272155E2 CRC64;
MLEVSTLRSP KADQRAGVGG HHVVGFVPAP PSPADVADEV DAFIVDDSCL LEYIDFSCCD
VPFFHADDGD ILPDLEVDPT ELLAEFASSP DDEPPPTTSA PGPGEPAAAA GAKEDVKEDG
AAAAAAAAAA DYDGSPPPPR GKKKKDDEER SSSLPEEKDA KNGGGDEVLS AVTTEDSSAG
AAKSCSPSAE GHSKRKPSSS SSSAAAGKNS HGKRKVKVDW TPELHRRFVQ AVEQLGIDKA
VPSRILELMG IECLTRHNIA SHLQKYRSHR KHLMAREAEA ASWTQKRQMY TAAAAAAAVA
AGGGPRKDAA AATAAVAPWV MPTIGFPPPH AAAMVPPPPH PPPFCRPPLH VWGHPTAGVE
PTTAAAPPPP SPHAQPPLLP VWPRHLAPPP PPLPAAWAHG HQPAPVDPAA YWQQQYNAAR
KWGPQAVTPG TPCMPPPLPP AAMLQRFPVP PVPGMVPHPM YRPIPPPSPP QGNKLAALQL
QLDAHPSKES IDAAIGDVLV KPWLPLPLGL KPPSLDSVMS ELHKQGIPKV PPAASGAAG
