ALY1_ARATH
ID ALY1_ARATH Reviewed; 971 AA.
AC Q6A331; C0SVR1;
DT 18-MAY-2010, integrated into UniProtKB/Swiss-Prot.
DT 18-MAY-2010, sequence version 2.
DT 03-AUG-2022, entry version 116.
DE RecName: Full=Protein ALWAYS EARLY 1;
DE Short=AtALY1;
GN Name=ALY1; OrderedLocusNames=At5g27610; ORFNames=F15A18.70;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], SUBCELLULAR LOCATION, AND TISSUE SPECIFICITY.
RX PubMed=15246533; DOI=10.1016/j.gene.2004.03.033;
RA Bhatt A.M., Zhang Q., Harris S.A., White-Cooper H., Dickinson H.;
RT "Gene structure and molecular analysis of Arabidopsis thaliana ALWAYS EARLY
RT homologs.";
RL Gene 336:219-229(2004).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Fujita M., Mizukado S., Seki M., Shinozaki K., Mitsuda N., Takiguchi Y.,
RA Takagi M.;
RT "ORF cloning and analysis of Arabidopsis transcription factor genes.";
RL Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:15246533}.
CC -!- TISSUE SPECIFICITY: Expressed ubiquitously in vegetative and
CC reproductive tissues. {ECO:0000269|PubMed:15246533}.
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DR EMBL; AJ583498; CAE47463.1; -; mRNA.
DR EMBL; AC007478; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002688; AED93706.1; -; Genomic_DNA.
DR EMBL; AB493764; BAH30602.1; -; mRNA.
DR RefSeq; NP_198113.2; NM_122643.3.
DR AlphaFoldDB; Q6A331; -.
DR SMR; Q6A331; -.
DR STRING; 3702.AT5G27610.1; -.
DR iPTMnet; Q6A331; -.
DR PaxDb; Q6A331; -.
DR PRIDE; Q6A331; -.
DR ProteomicsDB; 244902; -.
DR EnsemblPlants; AT5G27610.1; AT5G27610.1; AT5G27610.
DR GeneID; 832823; -.
DR Gramene; AT5G27610.1; AT5G27610.1; AT5G27610.
DR KEGG; ath:AT5G27610; -.
DR Araport; AT5G27610; -.
DR TAIR; locus:2143666; AT5G27610.
DR eggNOG; KOG1019; Eukaryota.
DR HOGENOM; CLU_007109_0_0_1; -.
DR InParanoid; Q6A331; -.
DR OMA; HYTELRG; -.
DR OrthoDB; 132154at2759; -.
DR PhylomeDB; Q6A331; -.
DR PRO; PR:Q6A331; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q6A331; baseline and differential.
DR Genevisible; Q6A331; AT.
DR GO; GO:0070176; C:DRM complex; IDA:TAIR.
DR GO; GO:0005654; C:nucleoplasm; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IBA:GO_Central.
DR GO; GO:0051726; P:regulation of cell cycle; IBA:GO_Central.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR GO; GO:0000003; P:reproduction; IBA:GO_Central.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
DR CDD; cd00167; SANT; 1.
DR InterPro; IPR028306; ALY_plant.
DR InterPro; IPR033471; DIRP.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR010561; LIN-9/ALY1.
DR InterPro; IPR001005; SANT/Myb.
DR PANTHER; PTHR21689; PTHR21689; 1.
DR PANTHER; PTHR21689:SF8; PTHR21689:SF8; 1.
DR Pfam; PF06584; DIRP; 1.
DR SMART; SM01135; DIRP; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
PE 2: Evidence at transcript level;
KW Nucleus; Reference proteome.
FT CHAIN 1..971
FT /note="Protein ALWAYS EARLY 1"
FT /id="PRO_0000394045"
FT DOMAIN 40..98
FT /note="SANT"
FT REGION 1..40
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 117..137
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 197..260
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 326..371
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 421..507
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..27
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 117..132
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 197..236
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 237..253
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 332..369
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 427..444
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 453..474
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 893
FT /note="S -> P (in Ref. 1; CAE47463)"
FT /evidence="ECO:0000305"
FT CONFLICT 916
FT /note="Q -> R (in Ref. 1; CAE47463)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 971 AA; 109087 MW; 9C200EA111BF4E6F CRC64;
MAPTRKSKSV NKRFTNEASP DINFGSASKT KQRKKKLADK LGPQWTKREL VRFYDAYRKY
VGDWKKVAAA VRNNRSVEMV ETLFCMNRAY LSLPEGTASV AGLIAMMTDH YSVMEGSESE
GEDHDASEVT RKHLKRKRPQ VLPSDFREEV VPPHSVASVE GCLSFLKQTQ AYEKRQRATG
KRTPRFLVAI THERDDIEDF SPPNKRAKKQ LDADDDASRR GGGSPYRRKE LSEITPTRLR
KTSQAQEAQF KHPDSSMFEN GVRDRWHKKG AADRDGALLM DMEGLVTQKE KIVRVEEAEG
NYSDDDDGLG ALKTLAEMSA SLAPAGLLES ESSPHWEEER KTNNVDKKSN TLETVSTSHH
REKAKQAGLE DNLLHAISAP DKRKPKSVPE SVDGNVVSIE ELRTSSRKRK PKFQVLDVVA
PKESTQDKSL YTKESAEVDS LKTPVKARRS SQGPAKQLKT AKTTVESSSA SDKKITGPDA
VVPATQVSAS GPETLPQKPP NRRKISLKKS LQERAKSLET THDKPRSFKK LSEHELLQEK
LSNCLSYPLV RRWCIYEWFY SAIDYPWFAK MEFTDYLNHV GLGHAPRLTR VEWSVIKSSL
GRPRRLSQRF LQDERDKLQE YRESVRKHYT ELRGCATGVL HTDLARPLSV GNRVIAIHPK
TREIRDGKIL TVDHNKCNVL FDELGVELVM DIDCMPLNPL EYMPEGLRRQ IDKCLAICKE
ARLNRHPSSD ASVLFSPSVL ENVNFSMNPP PAKQDDIREP VLYGKVIATN TTDQSIVINS
KVTGTEIQRT LALQHTSDAQ EMEPEMIEIV IESKSIAQAM VDAAIKAASS GKNNEDSENM
VHQALSSIGE HQPLDNSIVP GIKHQEYTNG SLDHHSLNTA EPMSNGFISQ EGSGKNKTPM
PSELITSCVA SWLMMQMISK KQYPPADVAQ LMDTVVNDLQ PRCPQNMPIY REIQTCMGLI
KTQIMALVRT S
