GLUD1_ORYSJ
ID GLUD1_ORYSJ Reviewed; 484 AA.
AC Q6K508; M1G5N9; Q6T726;
DT 30-AUG-2017, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 135.
DE RecName: Full=Glutelin type-D 1 {ECO:0000305};
DE Contains:
DE RecName: Full=Glutelin type-D 1 acidic chain {ECO:0000305};
DE Contains:
DE RecName: Full=Glutelin type-D 1 basic chain {ECO:0000305};
DE Flags: Precursor;
GN Name=GLUD1 {ECO:0000305}; Synonyms=GLUD-1 {ECO:0000303|PubMed:18980953};
GN OrderedLocusNames=Os02g0249000 {ECO:0000312|EMBL:BAF08349.1},
GN LOC_Os02g15090 {ECO:0000305};
GN ORFNames=OsJ_06077 {ECO:0000312|EMBL:EAZ22417.1},
GN OSJNBa0011N12.22 {ECO:0000312|EMBL:BAD19796.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RA Wan J.M., Niu H.B., Zhai H.Q., Wang C.M., Jiang L.;
RT "A novel Oryza sativa (japonica cultivar-group) glutelin gene.";
RL Submitted (OCT-2003) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA].
RA Yoon U.H., Kim Y.H.;
RT "Molecular cloning of glutelin genes in rice seeds.";
RL Submitted (NOV-2006) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 11-478.
RX PubMed=23319183; DOI=10.1007/s12010-012-0058-1;
RA He Y., Zhang Y., Wang S., Zeng H., Ding Y.;
RT "Characterization of a novel glutelin subunit OsGluBX by the experimental
RT approach and molecular dynamics simulations.";
RL Appl. Biochem. Biotechnol. 169:1482-1496(2013).
RN [7]
RP FUNCTION, SUBCELLULAR LOCATION, AND DEVELOPMENTAL STAGE.
RX PubMed=18980953; DOI=10.1093/jxb/ern265;
RA Kawakatsu T., Yamamoto M.P., Hirose S., Yano M., Takaiwa F.;
RT "Characterization of a new rice glutelin gene GluD-1 expressed in the
RT starchy endosperm.";
RL J. Exp. Bot. 59:4233-4245(2008).
CC -!- FUNCTION: Seed storage protein. {ECO:0000269|PubMed:18980953}.
CC -!- SUBUNIT: Hexamer; each subunit is composed of an acidic and a basic
CC chain derived from a single precursor and linked by a disulfide bond.
CC {ECO:0000250|UniProtKB:P04776}.
CC -!- SUBCELLULAR LOCATION: Protein storage vacuole
CC {ECO:0000269|PubMed:18980953}.
CC -!- DEVELOPMENTAL STAGE: Specifically expressed in starchy endosperm of
CC developing seeds from 5 to 30 days after flowering (DAF).
CC -!- SIMILARITY: Belongs to the 11S seed storage protein (globulins) family.
CC {ECO:0000305}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AY429650; AAR06951.1; -; mRNA.
DR EMBL; EF122464; ABL74551.1; -; mRNA.
DR EMBL; AP005511; BAD19796.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF08349.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS77897.1; -; Genomic_DNA.
DR EMBL; CM000139; EAZ22417.1; -; Genomic_DNA.
DR EMBL; JQ694716; AFZ41190.1; -; mRNA.
DR RefSeq; XP_015627130.1; XM_015771644.1.
DR AlphaFoldDB; Q6K508; -.
DR SMR; Q6K508; -.
DR STRING; 4530.OS02T0249000-01; -.
DR PaxDb; Q6K508; -.
DR PRIDE; Q6K508; -.
DR EnsemblPlants; Os02t0249000-01; Os02t0249000-01; Os02g0249000.
DR GeneID; 4328877; -.
DR Gramene; Os02t0249000-01; Os02t0249000-01; Os02g0249000.
DR KEGG; osa:4328877; -.
DR eggNOG; ENOG502QU1J; Eukaryota.
DR HOGENOM; CLU_026341_2_0_1; -.
DR InParanoid; Q6K508; -.
DR OMA; NINTHGI; -.
DR OrthoDB; 1477956at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000007752; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR GO; GO:0000326; C:protein storage vacuole; IEA:UniProtKB-SubCell.
DR GO; GO:0045735; F:nutrient reservoir activity; IEA:UniProtKB-KW.
DR Gene3D; 2.60.120.10; -; 2.
DR InterPro; IPR022379; 11S_seedstore_CS.
DR InterPro; IPR006044; 11S_seedstore_pln.
DR InterPro; IPR006045; Cupin_1.
DR InterPro; IPR014710; RmlC-like_jellyroll.
DR InterPro; IPR011051; RmlC_Cupin_sf.
DR Pfam; PF00190; Cupin_1; 2.
DR PRINTS; PR00439; 11SGLOBULIN.
DR SMART; SM00835; Cupin_1; 2.
DR SUPFAM; SSF51182; SSF51182; 1.
DR PROSITE; PS00305; 11S_SEED_STORAGE; 1.
PE 2: Evidence at transcript level;
KW Disulfide bond; Reference proteome; Seed storage protein; Signal;
KW Storage protein; Vacuole.
FT SIGNAL 1..27
FT /evidence="ECO:0000255"
FT CHAIN 28..285
FT /note="Glutelin type-D 1 acidic chain"
FT /id="PRO_0000441232"
FT CHAIN 286..484
FT /note="Glutelin type-D 1 basic chain"
FT /id="PRO_0000441233"
FT DOMAIN 43..238
FT /note="Cupin type-1 1"
FT /evidence="ECO:0000255"
FT DOMAIN 298..447
FT /note="Cupin type-1 2"
FT /evidence="ECO:0000255"
FT DISULFID 38..71
FT /evidence="ECO:0000250|UniProtKB:P04776"
FT DISULFID 114..292
FT /note="Interchain (between acidic and basic chains)"
FT /evidence="ECO:0000250|UniProtKB:P04776"
FT CONFLICT 323
FT /note="K -> R (in Ref. 1; AAR06951)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 484 AA; 54861 MW; 4788FC03D959F4EC CRC64;
MATTTSLLSS CLCALLLAPL FSQGVDAWES RQGASRQCRF DRLQAFEPLR KVRSEAGDTE
YFDERNEQFR CAGVFVIRRV IEPQGLVVPR YSNTPALAYI IQGKGYVGLT FPGCPATHQQ
QFQLFEQRQS DQAHKFRDEH QKIHEFRQGD VVALPASVAH WFYNGGDTPA VVVYVYDIKS
FANQLEPRQK EFLLAGNNQR GQQIFEHSIF QHSGQNIFSG FNTEVLSEAL GINTEASKRL
QSQNDQRGDI IRVKHGLQLL KPTLTQRQEE HRQYQQVQYR EGQYNGLDEN FCTIKARVNI
ENPSRADYYN PRAGRITLLN NQKFPILNLI GMGAARVNLY QNALLSPFWN INAHSVVYII
QGSVRVQVAN NQGRSVFNGV LHQGQLLIIP QNHAVIKKAE HNGCQYVAIK TISDPTVSWV
AGKNSILRAL PVDVIANAYR ISRDEARRLK NNRADEIGPF TPRFPQKSQR GYQFLTEGLS
LIGM
