GLYT5_ARATH
ID GLYT5_ARATH Reviewed; 466 AA.
AC Q3E9A4; F4K474;
DT 23-MAR-2010, integrated into UniProtKB/Swiss-Prot.
DT 23-MAR-2010, sequence version 3.
DT 03-AUG-2022, entry version 98.
DE RecName: Full=Probable glycosyltransferase At5g20260;
DE EC=2.4.-.-;
GN OrderedLocusNames=At5g20260; ORFNames=F5O24.150;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP IDENTIFICATION.
RX PubMed=18460606; DOI=10.1105/tpc.107.050906;
RA Jensen J.K., Sorensen S.O., Harholt J., Geshi N., Sakuragi Y., Moller I.,
RA Zandleven J., Bernal A.J., Jensen N.B., Sorensen C., Pauly M., Beldman G.,
RA Willats W.G., Scheller H.V.;
RT "Identification of a xylogalacturonan xylosyltransferase involved in pectin
RT biosynthesis in Arabidopsis.";
RL Plant Cell 20:1289-1302(2008).
CC -!- FUNCTION: May be involved in cell wall biosynthesis.
CC -!- SUBCELLULAR LOCATION: Golgi apparatus membrane {ECO:0000250}; Single-
CC pass type II membrane protein {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the glycosyltransferase 47 family.
CC {ECO:0000305}.
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DR EMBL; AF296825; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002688; ANM68556.1; -; Genomic_DNA.
DR RefSeq; NP_197526.6; NM_122033.6.
DR AlphaFoldDB; Q3E9A4; -.
DR STRING; 3702.AT5G20260.1; -.
DR CAZy; GT47; Glycosyltransferase Family 47.
DR PaxDb; Q3E9A4; -.
DR PRIDE; Q3E9A4; -.
DR DNASU; 832148; -.
DR EnsemblPlants; AT5G20260.2; AT5G20260.2; AT5G20260.
DR GeneID; 832148; -.
DR Gramene; AT5G20260.2; AT5G20260.2; AT5G20260.
DR KEGG; ath:AT5G20260; -.
DR Araport; AT5G20260; -.
DR eggNOG; KOG1021; Eukaryota.
DR HOGENOM; CLU_025166_1_4_1; -.
DR InParanoid; Q3E9A4; -.
DR OrthoDB; 789556at2759; -.
DR PhylomeDB; Q3E9A4; -.
DR PRO; PR:Q3E9A4; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q3E9A4; baseline and differential.
DR GO; GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0016757; F:glycosyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW.
DR GO; GO:0006486; P:protein glycosylation; IEA:InterPro.
DR InterPro; IPR004263; Exostosin.
DR InterPro; IPR040911; Exostosin_GT47.
DR PANTHER; PTHR11062; PTHR11062; 1.
DR Pfam; PF03016; Exostosin; 1.
PE 3: Inferred from homology;
KW Cell wall biogenesis/degradation; Glycoprotein; Glycosyltransferase;
KW Golgi apparatus; Membrane; Reference proteome; Signal-anchor; Transferase;
KW Transmembrane; Transmembrane helix.
FT CHAIN 1..466
FT /note="Probable glycosyltransferase At5g20260"
FT /id="PRO_0000392296"
FT TOPO_DOM 1..5
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 6..26
FT /note="Helical; Signal-anchor for type II membrane protein"
FT /evidence="ECO:0000255"
FT TOPO_DOM 27..466
FT /note="Lumenal"
FT /evidence="ECO:0000255"
FT CARBOHYD 67
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 231
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 269
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
SQ SEQUENCE 466 AA; 53222 MW; F55238F1B3A5F4B1 CRC64;
MEQSNFVNMK LSLVPTLLLL LVLLVFYQHH SSPNLNSNAL SSFVDATSLA PSPSPSLSME
FSVASSNLST ISSPPENKGN KRNIIEEGLA KSRSAIREAV RLKKFVSDKE ETFVPRGAVY
RNAFAFHQSH IEMEKKFKVW VYREGETPLV HMGPMNNIYS IEGQFMDEIE TGMSPFAANN
PEEAHAFLLP VSVANIVHYL YRPLVTYSRE QLHKVFLDYV DVVAHKYPYW NRSLGADHFY
VSCHDWAPDV SGSNPELMKN LIRVLCNANT SEGFMPQRDV SIPEINIPGG HLGPPRLSRS
SGHDRPILAF FAGGSHGYIR RILLQHWKDK DEEVQVHEYL AKNKDYFKLM ATARFCLCPS
GYEVASPRVV AAINLGCVPV IISDHYALPF SDVLDWTKFT IHVPSKKIPE IKTILKSISW
RRYRVLQRRV LQVQRHFVIN RPSQPFDMLR MLLHSVWLRR LNLRLP
