GLYT6_ARATH
ID GLYT6_ARATH Reviewed; 480 AA.
AC Q3E7Q9;
DT 23-MAR-2010, integrated into UniProtKB/Swiss-Prot.
DT 13-OCT-2009, sequence version 2.
DT 03-AUG-2022, entry version 98.
DE RecName: Full=Probable glycosyltransferase At5g25310;
DE EC=2.4.-.-;
GN OrderedLocusNames=At5g25310; ORFNames=F18G18.50;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP DISRUPTION PHENOTYPE.
RX PubMed=18460606; DOI=10.1105/tpc.107.050906;
RA Jensen J.K., Sorensen S.O., Harholt J., Geshi N., Sakuragi Y., Moller I.,
RA Zandleven J., Bernal A.J., Jensen N.B., Sorensen C., Pauly M., Beldman G.,
RA Willats W.G., Scheller H.V.;
RT "Identification of a xylogalacturonan xylosyltransferase involved in pectin
RT biosynthesis in Arabidopsis.";
RL Plant Cell 20:1289-1302(2008).
CC -!- FUNCTION: May be involved in cell wall biosynthesis.
CC -!- SUBCELLULAR LOCATION: Golgi apparatus membrane {ECO:0000250}; Single-
CC pass type II membrane protein {ECO:0000250}.
CC -!- DISRUPTION PHENOTYPE: No visible phenotype.
CC {ECO:0000269|PubMed:18460606}.
CC -!- SIMILARITY: Belongs to the glycosyltransferase 47 family.
CC {ECO:0000305}.
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DR EMBL; AC006258; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002688; AED93425.1; -; Genomic_DNA.
DR RefSeq; NP_197913.4; NM_122440.6.
DR AlphaFoldDB; Q3E7Q9; -.
DR SMR; Q3E7Q9; -.
DR STRING; 3702.AT5G25310.1; -.
DR CAZy; GT47; Glycosyltransferase Family 47.
DR PaxDb; Q3E7Q9; -.
DR PRIDE; Q3E7Q9; -.
DR ProteomicsDB; 248548; -.
DR DNASU; 832603; -.
DR EnsemblPlants; AT5G25310.1; AT5G25310.1; AT5G25310.
DR GeneID; 832603; -.
DR Gramene; AT5G25310.1; AT5G25310.1; AT5G25310.
DR KEGG; ath:AT5G25310; -.
DR Araport; AT5G25310; -.
DR TAIR; locus:2145472; AT5G25310.
DR eggNOG; KOG1021; Eukaryota.
DR HOGENOM; CLU_025166_1_3_1; -.
DR InParanoid; Q3E7Q9; -.
DR OMA; YGGEADY; -.
DR OrthoDB; 789556at2759; -.
DR PhylomeDB; Q3E7Q9; -.
DR BioCyc; ARA:AT5G25310-MON; -.
DR PRO; PR:Q3E7Q9; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q3E7Q9; baseline and differential.
DR GO; GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0016757; F:glycosyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW.
DR GO; GO:0006486; P:protein glycosylation; IEA:InterPro.
DR InterPro; IPR004263; Exostosin.
DR InterPro; IPR040911; Exostosin_GT47.
DR PANTHER; PTHR11062; PTHR11062; 1.
DR Pfam; PF03016; Exostosin; 1.
PE 3: Inferred from homology;
KW Cell wall biogenesis/degradation; Glycoprotein; Glycosyltransferase;
KW Golgi apparatus; Membrane; Reference proteome; Signal-anchor; Transferase;
KW Transmembrane; Transmembrane helix.
FT CHAIN 1..480
FT /note="Probable glycosyltransferase At5g25310"
FT /id="PRO_0000392297"
FT TOPO_DOM 1..10
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 11..31
FT /note="Helical; Signal-anchor for type II membrane protein"
FT /evidence="ECO:0000255"
FT TOPO_DOM 32..480
FT /note="Lumenal"
FT /evidence="ECO:0000255"
FT CARBOHYD 85
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 120
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 243
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 271
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 281
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
SQ SEQUENCE 480 AA; 55974 MW; CA4DA9D09D96B67F CRC64;
MDKFQSKFTR FGFISICFGS IALVLLISHC STSFFDYSFQ KFKFSFPEET ELRRNVYTSS
SGEENRVVVD SRHVSQQILT VRSTNSTLQS KPEKLNRRNL VEQGLAKARA SILEASSNVN
TTLFKSDLPN SEIYRNPSAL YRSYLEMEKR FKVYVYEEGE PPLVHDGPCK SVYAVEGRFI
TEMEKRRTKF RTYDPNQAYV YFLPFSVTWL VRYLYEGNSD AKPLKTFVSD YIRLVSTNHP
FWNRTNGADH FMLTCHDWGP LTSQANRDLF NTSIRVMCNA NSSEGFNPTK DVTLPEIKLY
GGEVDHKLRL SKTLSASPRP YLGFFAGGVH GPVRPILLKH WKQRDLDMPV YEYLPKHLNY
YDFMRSSKFC FCPSGYEVAS PRVIEAIYSE CIPVILSVNF VLPFTDVLRW ETFSVLVDVS
EIPRLKEILM SISNEKYEWL KSNLRYVRRH FELNDPPQRF DAFHLTLHSI WLRRLNLKLT
