GRDB_CARHZ
ID GRDB_CARHZ Reviewed; 435 AA.
AC Q3A9J4;
DT 26-FEB-2008, integrated into UniProtKB/Swiss-Prot.
DT 26-FEB-2008, sequence version 2.
DT 03-AUG-2022, entry version 72.
DE RecName: Full=Glycine reductase complex component B subunit gamma;
DE EC=1.21.4.2;
DE AltName: Full=Selenoprotein PB gamma;
GN Name=grdB; OrderedLocusNames=CHY_2393;
OS Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 /
OS Z-2901).
OC Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales;
OC Thermoanaerobacteraceae; Carboxydothermus.
OX NCBI_TaxID=246194;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC BAA-161 / DSM 6008 / Z-2901;
RX PubMed=16311624; DOI=10.1371/journal.pgen.0010065;
RA Wu M., Ren Q., Durkin A.S., Daugherty S.C., Brinkac L.M., Dodson R.J.,
RA Madupu R., Sullivan S.A., Kolonay J.F., Nelson W.C., Tallon L.J.,
RA Jones K.M., Ulrich L.E., Gonzalez J.M., Zhulin I.B., Robb F.T., Eisen J.A.;
RT "Life in hot carbon monoxide: the complete genome sequence of
RT Carboxydothermus hydrogenoformans Z-2901.";
RL PLoS Genet. 1:563-574(2005).
CC -!- FUNCTION: In the first step of glycine reductase, the substrate is
CC bound to component PB via a Schiff base intermediate. Then the PB-
CC activated substrate is nucleophilically attacked by the selenol anion
CC of component PA to transform it to a carboxymethylated selenoether and
CC the respective amine. By action of component PC, acetyl phosphate is
CC formed, leaving component PA in its oxidized state. Finally component
CC PA becomes reduced by the thioredoxin system to start a new catalytic
CC cycle of reductive deamination (By similarity). {ECO:0000250}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=[thioredoxin]-disulfide + acetyl phosphate + H2O + NH4(+) =
CC [thioredoxin]-dithiol + glycine + H(+) + phosphate;
CC Xref=Rhea:RHEA:12232, Rhea:RHEA-COMP:10698, Rhea:RHEA-COMP:10700,
CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:22191,
CC ChEBI:CHEBI:28938, ChEBI:CHEBI:29950, ChEBI:CHEBI:43474,
CC ChEBI:CHEBI:50058, ChEBI:CHEBI:57305; EC=1.21.4.2;
CC -!- SUBUNIT: Heterohexamer of two alpha, two beta and two gamma subunits.
CC Component of the glycine reductase complex, together with components A
CC and C. PB is substrate specific (By similarity). {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the GrdB/GrdF/GrdH family. {ECO:0000305}.
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DR EMBL; CP000141; ABB15736.1; -; Genomic_DNA.
DR STRING; 246194.CHY_2393; -.
DR PRIDE; Q3A9J4; -.
DR KEGG; chy:CHY_2393; -.
DR eggNOG; COG1978; Bacteria.
DR HOGENOM; CLU_053106_0_0_9; -.
DR OMA; NPDHIES; -.
DR Proteomes; UP000002706; Chromosome.
DR GO; GO:0030700; C:glycine reductase complex; IEA:InterPro.
DR GO; GO:0030699; F:glycine reductase activity; IEA:UniProtKB-EC.
DR InterPro; IPR010186; Gly_red_sel_B.
DR InterPro; IPR010187; Various_sel_PB.
DR Pfam; PF07355; GRDB; 1.
DR TIGRFAMs; TIGR01917; gly_red_sel_B; 1.
DR TIGRFAMs; TIGR01918; various_sel_PB; 1.
PE 3: Inferred from homology;
KW Oxidoreductase; Reference proteome; Selenocysteine.
FT CHAIN 1..435
FT /note="Glycine reductase complex component B subunit gamma"
FT /id="PRO_0000318647"
FT ACT_SITE 350
FT NON_STD 350
FT /note="Selenocysteine"
SQ SEQUENCE 435 AA; 46175 MW; 024A82C9B37195F7 CRC64;
MAKFRVVHYL NQFFGQIGGE EKADTAPLKK DGPVGPGTAL NGAFKGEAEV VGTVICGDSY
FAENMEEALK QILSMIKEYN PDLVVAGPAF NAGRYGTACG AVAEAVVKNL GIPAVTGMYP
ENPGVEMYKK SVYIIATADS AIGMRNAIPK MAALGLKLLK KEEIGTPEQE GYIARGIRKN
YFAEERGAKR AVDMLIAKIK GENFTTELPM PAFDRVPPNP AIKDLSKATI ALVTSGGIVP
KGNPDRIESS SASKFGKYSI AGVKDLTSDT FETAHGGYDP VYANQDADRV LPVDVLREME
AEGKIGKLHD YYYATVGNGT SVANAAKFGQ AIAADLKASG VDAVILTSTU GTCTRCGAAM
VKEIERAGIP VVHMCTIVPI SKTVGANRIV PTVAIPHPLG NPALPADEEK ALRRKLVEKA
LKALTTEVEG QTVFD