GRF1_ORYSI
ID GRF1_ORYSI Reviewed; 396 AA.
AC A2XA73; Q9SDZ5;
DT 03-OCT-2012, integrated into UniProtKB/Swiss-Prot.
DT 20-MAR-2007, sequence version 1.
DT 25-MAY-2022, entry version 57.
DE RecName: Full=Growth-regulating factor 1;
DE Short=OsGRF1;
DE AltName: Full=Transcription activator GRF1;
GN Name=GRF1; ORFNames=OsI_09149;
OS Oryza sativa subsp. indica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39946;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], SUBCELLULAR LOCATION, TISSUE SPECIFICITY, AND
RP INDUCTION.
RC STRAIN=cv. Pin Gaew 56;
RX PubMed=10712532; DOI=10.1104/pp.122.3.695;
RA van der Knaap E., Kim J.H., Kende H.;
RT "A novel gibberellin-induced gene from rice and its potential regulatory
RT role in stem growth.";
RL Plant Physiol. 122:695-704(2000).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. 93-11;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [3]
RP FUNCTION, TISSUE SPECIFICITY, AND INDUCTION BY GA3.
RC STRAIN=cv. Pin Gaew 56;
RX PubMed=15295073; DOI=10.1093/pcp/pch098;
RA Choi D., Kim J.H., Kende H.;
RT "Whole genome analysis of the OsGRF gene family encoding plant-specific
RT putative transcription activators in rice (Oryza sativa L.).";
RL Plant Cell Physiol. 45:897-904(2004).
CC -!- FUNCTION: Transcription activator that plays a regulatory role in
CC gibberellin-induced stem elongation. {ECO:0000269|PubMed:15295073}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU01002,
CC ECO:0000269|PubMed:10712532}.
CC -!- TISSUE SPECIFICITY: Highly expressed in the intercalary meristem of the
CC internode and in the shoot apex. Detected in the leaf primordia and
CC emerging leaves in the uppermost node. Preferentially localized in the
CC epidermis and in the tissues surrounding vascular bundles of the
CC intercalary meristem of the internode and in adventitious roots of the
CC second highest node. Low expression in the coleoptile and in the
CC youngest leaf. {ECO:0000269|PubMed:10712532,
CC ECO:0000269|PubMed:15295073}.
CC -!- INDUCTION: By gibberellic acid (GA3) and submergence.
CC {ECO:0000269|PubMed:10712532, ECO:0000269|PubMed:15295073}.
CC -!- DOMAIN: The QLQ domain and WRC domain may be involved in protein-
CC protein interaction and DNA-binding, respectively.
CC -!- SIMILARITY: Belongs to the GRF family. {ECO:0000305}.
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DR EMBL; AF201895; AAF17567.1; -; mRNA.
DR EMBL; CM000127; EAY87733.1; -; Genomic_DNA.
DR AlphaFoldDB; A2XA73; -.
DR STRING; 39946.A2XA73; -.
DR PRIDE; A2XA73; -.
DR EnsemblPlants; BGIOSGA005497-TA; BGIOSGA005497-PA; BGIOSGA005497.
DR Gramene; BGIOSGA005497-TA; BGIOSGA005497-PA; BGIOSGA005497.
DR HOGENOM; CLU_037908_0_0_1; -.
DR OMA; KYMASGT; -.
DR Proteomes; UP000007015; Chromosome 2.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0032502; P:developmental process; IEA:InterPro.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR GO; GO:0030912; P:response to deep water; IEP:UniProtKB.
DR GO; GO:0009739; P:response to gibberellin; IEP:UniProtKB.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
DR InterPro; IPR014978; Gln-Leu-Gln_QLQ.
DR InterPro; IPR031137; GRF.
DR InterPro; IPR014977; WRC_dom.
DR PANTHER; PTHR31602; PTHR31602; 1.
DR Pfam; PF08880; QLQ; 1.
DR Pfam; PF08879; WRC; 1.
DR SMART; SM00951; QLQ; 1.
DR PROSITE; PS51666; QLQ; 1.
DR PROSITE; PS51667; WRC; 1.
PE 2: Evidence at transcript level;
KW Activator; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..396
FT /note="Growth-regulating factor 1"
FT /id="PRO_0000419301"
FT DOMAIN 18..53
FT /note="QLQ"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01001"
FT DOMAIN 90..134
FT /note="WRC"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01002"
FT REGION 117..176
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 86..105
FT /note="Bipartite nuclear localization signal"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01002"
FT MOTIF 123..130
FT /note="Bipartite nuclear localization signal"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01002"
FT COMPBIAS 139..171
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 396 AA; 43446 MW; C169EB92D1EABCA5 CRC64;
MMMMSGRPSG GAGGGRYPFT ASQWQELEHQ ALIYKYMASG TPIPSDLILP LRRSFLLDSA
LATSPSLAFP PQPSLGWGCF GMGFGRKAED PEPGRCRRTD GKKWRCSKEA YPDSKYCEKH
MHRGKNRSRK PVEMSLATPP PPSSSATSAA SNSSAGVAPT TTTTSSPAPS YSRPAPHDAA
PYQALYGGPY AAATARTPAA AAYHAQVSPF HLHIDTTHPH PPPSYYSMDH KEYAYGHATK
EVHGEHAFFS DGTEREHHHA AAGHGQWQFK QLGMEPKQST TPLFPGAGYG HTAASPYAID
LSKEDDDEKE RRQQQQQQQQ HCFLLGADLR LEKPAGHDHA AAAQKPLRHF FDEWPHEKNS
KGSWMGLEGE TQLSMSIPMA ANDLPITTTS RYHNDE
