GRF5_ORYSJ
ID GRF5_ORYSJ Reviewed; 348 AA.
AC Q6AWY4; Q70LH4;
DT 03-OCT-2012, integrated into UniProtKB/Swiss-Prot.
DT 13-SEP-2004, sequence version 1.
DT 03-AUG-2022, entry version 89.
DE RecName: Full=Growth-regulating factor 5;
DE Short=OsGRF5;
DE AltName: Full=Transcription activator GRF5;
GN Name=GRF5; OrderedLocusNames=Os06g0116200, LOC_Os06g02560;
GN ORFNames=OSJNBa0019F11.24;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 152-348.
RC STRAIN=cv. Nipponbare; TISSUE=Embryo;
RX PubMed=15078336; DOI=10.1111/j.1365-313x.2004.02037.x;
RA Ye R., Yao Q.-H., Xu Z.-H., Xue H.-W.;
RT "Development of an efficient method for the isolation of factors involved
RT in gene transcription during rice embryo development.";
RL Plant J. 38:348-357(2004).
RN [6]
RP IDENTIFICATION, AND GENE FAMILY.
RC STRAIN=cv. Nipponbare;
RX PubMed=15295073; DOI=10.1093/pcp/pch098;
RA Choi D., Kim J.H., Kende H.;
RT "Whole genome analysis of the OsGRF gene family encoding plant-specific
RT putative transcription activators in rice (Oryza sativa L.).";
RL Plant Cell Physiol. 45:897-904(2004).
CC -!- FUNCTION: Transcription activator that plays a regulatory role in
CC gibberellin-induced stem elongation. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU01002}.
CC -!- DOMAIN: The QLQ domain and WRC domain may be involved in protein-
CC protein interaction and DNA-binding, respectively.
CC -!- SIMILARITY: Belongs to the GRF family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAD97479.1; Type=Erroneous termination; Note=Extended C-terminus.; Evidence={ECO:0000305};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AP002837; BAD67915.1; -; Genomic_DNA.
DR EMBL; AP008212; BAF18532.1; -; Genomic_DNA.
DR EMBL; AP014962; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AK103508; BAG96119.1; -; mRNA.
DR EMBL; AJ566409; CAD97479.1; ALT_TERM; mRNA.
DR EMBL; BK004860; DAA05209.1; -; Genomic_DNA.
DR RefSeq; XP_015641605.1; XM_015786119.1.
DR AlphaFoldDB; Q6AWY4; -.
DR STRING; 39947.Q6AWY4; -.
DR PaxDb; Q6AWY4; -.
DR PRIDE; Q6AWY4; -.
DR EnsemblPlants; Os06t0116200-01; Os06t0116200-01; Os06g0116200.
DR GeneID; 4339928; -.
DR Gramene; Os06t0116200-01; Os06t0116200-01; Os06g0116200.
DR KEGG; osa:4339928; -.
DR InParanoid; Q6AWY4; -.
DR OrthoDB; 1097140at2759; -.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0032502; P:developmental process; IEA:InterPro.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
DR InterPro; IPR014978; Gln-Leu-Gln_QLQ.
DR InterPro; IPR031137; GRF.
DR InterPro; IPR014977; WRC_dom.
DR PANTHER; PTHR31602; PTHR31602; 1.
DR Pfam; PF08880; QLQ; 1.
DR Pfam; PF08879; WRC; 1.
DR SMART; SM00951; QLQ; 1.
DR PROSITE; PS51666; QLQ; 1.
DR PROSITE; PS51667; WRC; 1.
PE 2: Evidence at transcript level;
KW Activator; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..348
FT /note="Growth-regulating factor 5"
FT /id="PRO_0000419306"
FT DOMAIN 24..59
FT /note="QLQ"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01001"
FT DOMAIN 97..141
FT /note="WRC"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01002"
FT REGION 125..165
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 306..348
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 94..112
FT /note="Bipartite nuclear localization signal"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01002"
FT MOTIF 130..137
FT /note="Bipartite nuclear localization signal"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01002"
FT COMPBIAS 144..165
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 306..325
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 326..342
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 348 AA; 37815 MW; E62F64C279C4CE5B CRC64;
MLSSSPSAAA PGIGGYQPQR GAAVFTAAQW AELEQQALIY KYLVAGVPVP GDLLLPIRPH
SSAAATYSFA NPAAAPFYHH HHHPSLSYYA YYGKKLDPEP WRCRRTDGKK WRCSKEAHPD
SKYCERHMHR GRNRSRKPVE SKTAAPAPQS QPQLSNVTTA THDTDAPLPS LTVGAKTHGL
SLGGAGSSQF HVDAPSYGSK YSLGAKADVG ELSFFSGASG NTRGFTIDSP TDSSWHSLPS
SVPPYPMSKP RDSGLLPGAY SYSHLEPSQE LGQVTIASLS QEQERRSFGG GAGGMLGNVK
HENQPLRPFF DEWPGRRDSW SEMDEERSNQ TSFSTTQLSI SIPMPRCD
