GT43H_ORYSJ
ID GT43H_ORYSJ Reviewed; 381 AA.
AC Q7XTB2; Q7X7U3;
DT 03-MAY-2011, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2004, sequence version 2.
DT 03-AUG-2022, entry version 98.
DE RecName: Full=Probable glucuronosyltransferase Os04g0103100 {ECO:0000305};
DE EC=2.4.-.- {ECO:0000305};
DE AltName: Full=OsGT43H {ECO:0000303|PubMed:24525904};
GN Name=GT43H {ECO:0000303|PubMed:24525904};
GN OrderedLocusNames=Os04g0103100 {ECO:0000312|EMBL:BAS87514.1},
GN LOC_Os04g01280 {ECO:0000305};
GN ORFNames=OsJ_13499 {ECO:0000312|EMBL:EEE60368.1},
GN OSJNBa0068L06.11 {ECO:0000312|EMBL:CAE01585.2},
GN OSJNBa0094O15.1 {ECO:0000312|EMBL:CAD39333.2};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447439; DOI=10.1038/nature01183;
RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y.,
RA Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q.,
RA Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T.,
RA Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R.,
RA Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G.,
RA Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C.,
RA Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J.,
RA Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J.,
RA Li J., Hong G., Xue Y., Han B.;
RT "Sequence and analysis of rice chromosome 4.";
RL Nature 420:316-320(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP SUBCELLULAR LOCATION.
RX PubMed=24525904; DOI=10.4161/psb.27809;
RA Lee C., Teng Q., Zhong R., Yuan Y., Ye Z.H.;
RT "Functional roles of rice glycosyltransferase family GT43 in xylan
RT biosynthesis.";
RL Plant Signal. Behav. 9:E27809-E27809(2014).
CC -!- FUNCTION: Involved in the synthesis of glucuronoxylan hemicellulose in
CC secondary cell walls. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Golgi apparatus membrane
CC {ECO:0000269|PubMed:24525904}; Single-pass type II membrane protein
CC {ECO:0000305|PubMed:24525904}.
CC -!- SIMILARITY: Belongs to the glycosyltransferase 43 family.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AK070873; Type=Frameshift; Evidence={ECO:0000305};
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DR EMBL; AL606442; CAE01585.2; -; Genomic_DNA.
DR EMBL; AL662935; CAD39333.2; -; Genomic_DNA.
DR EMBL; AP008210; BAF13911.1; -; Genomic_DNA.
DR EMBL; AP014960; BAS87514.1; -; Genomic_DNA.
DR EMBL; CM000141; EEE60368.1; -; Genomic_DNA.
DR EMBL; AK070873; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015636174.1; XM_015780688.1.
DR AlphaFoldDB; Q7XTB2; -.
DR SMR; Q7XTB2; -.
DR STRING; 4530.OS04T0103100-01; -.
DR CAZy; GT43; Glycosyltransferase Family 43.
DR PaxDb; Q7XTB2; -.
DR PRIDE; Q7XTB2; -.
DR EnsemblPlants; Os04t0103100-01; Os04t0103100-01; Os04g0103100.
DR GeneID; 4334894; -.
DR Gramene; Os04t0103100-01; Os04t0103100-01; Os04g0103100.
DR KEGG; osa:4334894; -.
DR eggNOG; KOG1476; Eukaryota.
DR HOGENOM; CLU_044006_1_0_1; -.
DR InParanoid; Q7XTB2; -.
DR OMA; HHHPFAS; -.
DR OrthoDB; 901158at2759; -.
DR PlantReactome; R-OSA-5654909; Xylan biosynthesis.
DR Proteomes; UP000000763; Chromosome 4.
DR Proteomes; UP000007752; Chromosome 4.
DR Proteomes; UP000059680; Chromosome 4.
DR ExpressionAtlas; Q7XTB2; baseline and differential.
DR Genevisible; Q7XTB2; OS.
DR GO; GO:0000139; C:Golgi membrane; IDA:UniProtKB.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0015018; F:galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity; IEA:InterPro.
DR GO; GO:0042285; F:xylosyltransferase activity; IBA:GO_Central.
DR GO; GO:0005975; P:carbohydrate metabolic process; IBA:GO_Central.
DR GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW.
DR GO; GO:0010417; P:glucuronoxylan biosynthetic process; IBA:GO_Central.
DR GO; GO:0009834; P:plant-type secondary cell wall biogenesis; IBA:GO_Central.
DR Gene3D; 3.90.550.10; -; 1.
DR InterPro; IPR005027; Glyco_trans_43.
DR InterPro; IPR029044; Nucleotide-diphossugar_trans.
DR PANTHER; PTHR10896; PTHR10896; 1.
DR Pfam; PF03360; Glyco_transf_43; 1.
DR SUPFAM; SSF53448; SSF53448; 1.
PE 2: Evidence at transcript level;
KW Cell wall biogenesis/degradation; Glycoprotein; Glycosyltransferase;
KW Golgi apparatus; Membrane; Reference proteome; Signal-anchor; Transferase;
KW Transmembrane; Transmembrane helix.
FT CHAIN 1..381
FT /note="Probable glucuronosyltransferase Os04g0103100"
FT /id="PRO_0000407556"
FT TOPO_DOM 1..69
FT /note="Cytoplasmic"
FT /evidence="ECO:0000305"
FT TRANSMEM 70..90
FT /note="Helical; Signal-anchor for type II membrane protein"
FT /evidence="ECO:0000255"
FT TOPO_DOM 91..381
FT /note="Lumenal"
FT /evidence="ECO:0000305"
FT REGION 21..50
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 96..122
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 26..45
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CARBOHYD 194
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 296
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
SQ SEQUENCE 381 AA; 42897 MW; BF5CC08798962FF6 CRC64;
MASIRRPHSP AKQQHLLRHG HLGPFASSSP PSSPLRHSSS SSSPRSAAHH HHHLLAAAGH
TSFRRPLPRF AAFFLLGSFL GLLHFLSHLP RPLGPIPNPN SHHRHRDPFP ILQHPHPPST
PHSNHKLLIV VTPTRARPSQ AYYLTRMAHT LRLLHDSPLL WIVVQAGNPT PEAAAALRRT
AVLHRYVGCC HNINASAPDF RPHQINAALD IVDNHRLDGV LYFADEEGVY SLHLFHHLRQ
IRRFATWPVP EISQHTNEVV LQGPVCKQGQ VVGWHTTHDG NKLRRFHLAM SGFAFNSTML
WDPKLRSHLA WNSIRHPEMV KESLQGSAFV EQLVEDESQM EGIPADCSQI MNWHVPFGSE
SVVYPKGWRV ATDLDVIIPL K
