GT4_ORYSJ
ID GT4_ORYSJ Reviewed; 483 AA.
AC Q10MK2; A0A0N7KH47;
DT 14-OCT-2015, integrated into UniProtKB/Swiss-Prot.
DT 22-AUG-2006, sequence version 1.
DT 03-AUG-2022, entry version 104.
DE RecName: Full=Probable glycosyltransferase 4 {ECO:0000305};
DE Short=OsGT4 {ECO:0000303|PubMed:24834920};
DE EC=2.4.-.- {ECO:0000305};
GN Name=GT4 {ECO:0000303|PubMed:24834920};
GN OrderedLocusNames=Os03g0305800 {ECO:0000312|EMBL:BAF11800.1},
GN LOC_Os03g19310 {ECO:0000312|EMBL:ABF95525.1};
GN ORFNames=OsJ_10555 {ECO:0000312|EMBL:EAZ26651.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP INDUCTION BY ATRAZINE.
RX PubMed=24042130; DOI=10.1016/j.gene.2013.09.004;
RA Lu Y.C., Yang S.N., Zhang J.J., Zhang J.J., Tan L.R., Yang H.;
RT "A collection of glycosyltransferases from rice (Oryza sativa) exposed to
RT atrazine.";
RL Gene 531:243-252(2013).
RN [8]
RP NOMENCLATURE.
RX PubMed=24834920; DOI=10.1093/jxb/eru189;
RA Wang C., Li S., Ng S., Zhang B., Zhou Y., Whelan J., Wu P., Shou H.;
RT "Mutation in xyloglucan 6-xylosytransferase results in abnormal root hair
RT development in Oryza sativa.";
RL J. Exp. Bot. 65:4149-4157(2014).
CC -!- FUNCTION: Probable glycosyltransferase that may be involved in the
CC biosynthesis of xyloglucan. {ECO:0000250|UniProtKB:Q10MQ0}.
CC -!- SUBCELLULAR LOCATION: Golgi apparatus membrane {ECO:0000305}; Single-
CC pass type II membrane protein {ECO:0000305}.
CC -!- INDUCTION: By treatment with atrazine. {ECO:0000269|PubMed:24042130}.
CC -!- SIMILARITY: Belongs to the glycosyltransferase 34 family.
CC {ECO:0000305}.
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DR EMBL; DP000009; ABF95525.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF11800.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS83809.1; -; Genomic_DNA.
DR EMBL; CM000140; EAZ26651.1; -; Genomic_DNA.
DR EMBL; AK105101; BAG97093.1; -; mRNA.
DR RefSeq; XP_015630648.1; XM_015775162.1.
DR AlphaFoldDB; Q10MK2; -.
DR SMR; Q10MK2; -.
DR STRING; 4530.OS03T0305800-02; -.
DR CAZy; GT34; Glycosyltransferase Family 34.
DR PaxDb; Q10MK2; -.
DR PRIDE; Q10MK2; -.
DR EnsemblPlants; Os03t0305800-02; Os03t0305800-02; Os03g0305800.
DR GeneID; 4332599; -.
DR Gramene; Os03t0305800-02; Os03t0305800-02; Os03g0305800.
DR KEGG; osa:4332599; -.
DR eggNOG; KOG4748; Eukaryota.
DR HOGENOM; CLU_034328_1_1_1; -.
DR InParanoid; Q10MK2; -.
DR OMA; SYEASRC; -.
DR OrthoDB; 1223199at2759; -.
DR PlantReactome; R-OSA-5655101; Xyloglucan biosynthesis.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; Q10MK2; OS.
DR GO; GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0016758; F:hexosyltransferase activity; IBA:GO_Central.
DR GO; GO:0009969; P:xyloglucan biosynthetic process; IBA:GO_Central.
DR Gene3D; 3.90.550.10; -; 1.
DR InterPro; IPR008630; Glyco_trans_34.
DR InterPro; IPR029044; Nucleotide-diphossugar_trans.
DR PANTHER; PTHR31311; PTHR31311; 1.
DR Pfam; PF05637; Glyco_transf_34; 1.
PE 2: Evidence at transcript level;
KW Glycoprotein; Glycosyltransferase; Golgi apparatus; Membrane;
KW Reference proteome; Signal-anchor; Transferase; Transmembrane;
KW Transmembrane helix.
FT CHAIN 1..483
FT /note="Probable glycosyltransferase 4"
FT /id="PRO_0000434329"
FT TOPO_DOM 1..26
FT /note="Cytoplasmic"
FT /evidence="ECO:0000305"
FT TRANSMEM 27..47
FT /note="Helical; Signal-anchor for type II membrane protein"
FT /evidence="ECO:0000255"
FT TOPO_DOM 48..483
FT /note="Lumenal"
FT /evidence="ECO:0000305"
FT REGION 71..119
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 74..110
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CARBOHYD 448
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
SQ SEQUENCE 483 AA; 54711 MW; EE59D1F1D33FBE63 CRC64;
MSKLQDRHGG EAAADVGRRA RHQRLLLSFP VFPIVLLLLA PCTIFFFTSG DVPLPRIRIE
YARRDAPTIT AVAADTSPPP PSPPSSSPPP LSFPPPPPPP SSPPPPALPV VDDHSDTQRS
LRRLRQLTDS PYTLGPAVTG YDARRAEWLR DHTEFPASVG RGRPRVLMVT GSAPRRCKDP
EGDHLLLRAL KNKVDYCRVH GFDIFYSNTV LDAEMSGFWT KLPLLRALML AHPETELLWW
VDSDVVFTDM LFEPPWGRYR RHNLVIHGWD GAVYGAKTWL GLNAGSFIIR NCQWSLDLLD
AWAPMGPPGP VRDMYGKIFA ETLTNRPPYE ADDQSALVFL LVTQRHRWGA KVFLENSYNL
HGFWADIVDR YEEMRRQWRH PGLGDDRWPL ITHFVGCKPC GGDDASYDGE RCRRGMDRAF
NFADDQILEL YGFAHESLDT MAVRRVRNDT GRPLDADNQE LGRLLHPTFK ARKKKTSRAA
RPM
